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I. Information of ICE

ICEberg ID	394
Name	Tn6098
ICEO ID	ICEO_0000168
Organism	Lactococcus lactis subsp. lactis KF147
Size (bp)	51355
GC content [Genome] (%)	34.99[34.91]
Insertion site	TTATACCATAATTAC
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	CP001834 (complete ICE sequence in this genome)
Replicon	chromosome (2598144 bp, BioProject:42831) [NC_013656]
Genome coordinates	2295682..2347036
Putative oriT region	-
Putative relaxase	-

II. ICE interaction with IME/CIME/

The interaction information of Tn6098 is not available.

The graph information of Tn6098 components from CP001834
Complete gene list of Tn6098 from CP001834
#	Gene	Coordinates [+/-], size (bp)	Product  (GenBank annotation)	*Reannotation
1	yvcA	2291721..2292314 [-], 594	Hypothetical protein
2	snf	2292530..2295634 [-], 3105	DNA/RNA helicase, SWF/SNF family
3	LLKF_2229	2295829..2297100 [-], 1272	Integrase, conjugative transposon Tn5276
4	LLKF_2230	2297161..2297370 [-], 210	Excisionase, conjugative transposon Tn5276
5	ardA	2297429..2297920 [-], 492	Conjugative transposon antirestriction protein
6	LLKF_2232	2297944..2298438 [-], 495	Hypothetical protein
7	LLKF_2233	2298533..2299597 [-], 1065	N-acetylmuramoyl-L-alanine amidase, CHAP domain family	PrgK, T4SS component
8	LLKF_2234	2299613..2301658 [-], 2046	Hypothetical protein
9	LLKF_2235	2301659..2304226 [-], 2568	Conjugal transfer protein	YddE, T4SS component
10	LLKF_2236	2304226..2304591 [-], 366	Hypothetical protein	YddD, T4SS component
11	LLKF_2237	2304600..2304833 [-], 234	Hypothetical protein
12	LLKF_2238	2304839..2306107 [-], 1269	Hypothetical protein
13	LLKF_2239	2306111..2306311 [-], 201	Hypothetical protein
14	LLKF_2240	2306681..2306941 [-], 261	Hypothetical protein
15	LLKF_2241	2307055..2307315 [-], 261	Hypothetical protein
16	LLKF_2242	2307348..2307614 [-], 267	Hypothetical protein
17	LLKF_2243	2307639..2308916 [-], 1278	Replication initiation factor
18	LLKF_2244	2309297..2310916 [-], 1620	DNA segregation ATPase, FtsK/SpoIIIE family	YdcQ, T4SS component
19	LLKF_2245	2310926..2311432 [-], 507	Hypothetical protein
20	LLKF_2246	2311435..2311770 [-], 336	Hypothetical protein
21	LLKF_2247	2311774..2311896 [-], 123	Hypothetical protein
22	LLKF_2248	2311955..2312146 [-], 192	Hypothetical protein
23	LLKF_2249	2312285..2312419 [-], 135	Hypothetical protein
24	LLKF_2250	2312416..2312682 [-], 267	Hypothetical protein
25	LLKF_2251	2312819..2313370 [-], 552	Hypothetical protein
26	LLKF_2252	2313480..2313800 [-], 321	Transcriptional regulator
27	LLKF_2253	2314169..2314327 [+], 159	Hypothetical protein
28	LLKF_2254	2314496..2314840 [+], 345	Transcriptional regulator
29	LLKF_2255	2314818..2315900 [+], 1083	Hypothetical protein
30	LLKF_2256	2315964..2316416 [+], 453	IS3/IS911transposase, N-terminal fragment
31	LLKF_2257	2316470..2316754 [+], 285	-
32	LLKF_2258	2316702..2317118 [+], 417	-
33	sucP	2317224..2318669 [-], 1446	Sucrose phosphorylase
34	LLKF_2260	2318756..2319583 [-], 828	Sugar ABC transporter, permease protein
35	LLKF_2261	2319596..2320465 [-], 870	Sugar ABC transporter, permease protein
36	LLKF_2262	2320566..2321810 [-], 1245	Sugar ABC transporter, sugar-binding protein
37	LLKF_2263	2321960..2322829 [+], 870	Transcriptional regulator, AraC family
38	purH	2322901..2324445 [-], 1545	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
39	galT	2324570..2326054 [-], 1485	Galactose 1-phosphate uridylyltransferase
40	galK	2326051..2327241 [-], 1191	Galactokinase
41	aga	2327238..2329454 [-], 2217	Alpha-galactosidase
42	galR	2329585..2330622 [-], 1038	Transcriptional regulator, LacI family
43	fbp	2330747..2332669 [-], 1923	Fructose 1,6-bisphosphatase
44	LLKF_2270	2332809..2333120 [+], 312	Hypothetical protein, N-terminal fragment
45	tnp	2333148..2333432 [+], 285	-
46	LLKF_2272	2333380..2333796 [+], 417	-
47	LLKF_2273	2335306..2336160 [-], 855	IS981 transposase B	Integrase
48	LLKF_2274	2336157..2336417 [-], 261	IS981 transposase A
49	LLKF_2275	2336808..2337641 [+], 834	Hypothetical protein
50	LLKF_2276	2337802..2338656 [-], 855	IS981 transposase B	Integrase
51	LLKF_2277	2338653..2338913 [-], 261	IS981 transposase A
52	LLKF_2278	2339521..2340483 [+], 963	D-Isomer specific 2-hydroxyacid dehydrogenase, NAD-dependent
53	ceo	2341013..2341936 [-], 924	N5-(Carboxyethyl)ornithine synthase
54	corA	2341975..2342925 [-], 951	Mg2+ and Co2+ transporter, CorA family
55	ymgG	2343050..2343601 [-], 552	General stress protein, Gls24 family
56	ymgH	2343622..2343810 [-], 189	Hypothetical protein
57	ymgI	2343820..2344380 [-], 561	Hypothetical protein
58	ymgJ	2344410..2344649 [-], 240	Hypothetical protein
59	cspB	2345164..2345364 [-], 201	cold-shock protein
60	cspC	2345642..2345842 [-], 201	cold-shock protein
61	cspA	2345973..2346173 [-], 201	cold-shock protein
62	yvcC	2347228..2348238 [-], 1011	-
63	yvcC	2348252..2348527 [-], 276	-
64	poxL	2348944..2350647 [-], 1704	Pyruvate oxidase
65	yvdA	2350844..2351830 [-], 987	Beta-lactamase family protein

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	55	Fasta

(1) Machielsen R; Siezen RJ; van Hijum SA; van Hylckama Vlieg JE (2011). Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis. Appl Environ Microbiol. 77(2):555-63. [PubMed:21115709]

experimental literature

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