ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	389
Name	CTnPg3
Organism	Porphyromonas gingivalis ATCC 33277
Size (bp)	17585
GC content [Genome] (%)	39.09[48.36]
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AP009380 (complete ICE sequence in this genome)
Replicon	chromosome (2354886 bp, BioProject:19051) [NC_010729]
Genome coordinates	1021623..1039207
Putative oriT region	-
Putative relaxase	coordinates: 1029413..1030354; Locus tag: PGN_0925; Family: MOB_P

II. ICE interaction with IME/CIME/

The interaction information of CTnPg3 is not available.

The graph information of CTnPg3 components from AP009380

Complete gene list of CTnPg3 from AP009380
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	PGN_0915	1016793..1018340 [-], 1548	conserved hypothetical protein
2	dnaK	1018923..1020845 [+], 1923	molecular chaperone DnaK
3	PGN_0917	1021623..1022885 [+], 1263	tyrosine type site-specific recombinase	Integrase
4	PGN_0918	1023531..1024616 [+], 1086	transposase in ISPg1
5	PGN_0919	1025094..1025738 [-], 645	hypothetical protein
6	PGN_0920	1026238..1026375 [+], 138	putative partial excisionase
7	PGN_0921	1026426..1026593 [+], 168	hypothetical protein
8	PGN_0922	1026608..1027813 [+], 1206	conserved hypothetical protein
9	PGN_0923	1028044..1028931 [+], 888	putative DNA primase
10	PGN_0924	1029061..1029423 [+], 363	mobilization protein
11	PGN_0925	1029413..1030354 [+], 942	putative mobilization protein	Relaxase, MOB_P Family
12	PGN_0926	1030380..1031102 [+], 723	conserved hypothetical protein
13	PGN_0927	1031232..1031435 [+], 204	conserved hypothetical protein
14	PGN_0928	1031507..1032715 [+], 1209	conserved hypothetical protein
15	PGN_0929	1032705..1034606 [+], 1902	conserved hypothetical protein	T4CP
16	PGN_0930	1034802..1035848 [+], 1047	hypothetical protein
17	PGN_0931	1035904..1036683 [+], 780	conserved hypothetical protein
18	PGN_0932	1037241..1037696 [+], 456	probable GCN5-related N-acetyltransferase
19	PGN_0933	1037750..1039207 [+], 1458	probable transcriptional regulator
20	PGN_0934	1039361..1040263 [+], 903	transposase in ISPg3
21	PGN_0935	1040509..1042389 [+], 1881	conserved hypothetical protein
22	PGN_0936	1042630..1043583 [+], 954	putative glycerate dehydrogenase
23	PGN_0937	1043701..1043811 [+], 111	hypothetical protein

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	17	Fasta

(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PubMed:18524787]