ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	388
Name	CTnPg2
Organism	Porphyromonas gingivalis ATCC 33277
Size (bp)	27193
GC content [Genome] (%)	40.57[48.36]
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AP009380 (complete ICE sequence in this genome)
Replicon	chromosome (2354886 bp, BioProject:19051) [NC_010729]
Genome coordinates	627916..655108
Putative oriT region	-
Putative relaxase	-

II. ICE interaction with IME/CIME/

The interaction information of CTnPg2 is not available.

The graph information of CTnPg2 components from AP009380

Complete gene list of CTnPg2 from AP009380
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	PGN_0574	624175..624516 [+], 342	conserved hypothetical protein
2	PGN_0575	624688..625749 [-], 1062	transposase in ISPg1
3	PGN_0576	625842..625943 [+], 102	hypothetical protein
4	PGN_0577	626732..627817 [+], 1086	transposase in ISPg1
5	PGN_0578	627916..628137 [-], 222	conserved hypothetical protein found in conjugate transposon
6	PGN_0579	628159..629265 [+], 1107	conserved hypothetical protein	T4CP
7	PGN_0580	629353..634965 [+], 5613	conserved hypothetical protein
8	PGN_0581	635151..636635 [+], 1485	conserved hypothetical protein
9	PGN_0582	636731..638812 [+], 2082	DNA topoisomerase I
10	PGN_0583	638954..640594 [+], 1641	conserved hypothetical protein
11	PGN_0584	640869..642197 [-], 1329	conserved hypothetical protein
12	PGN_0585	642231..643133 [+], 903	transposase in ISPg3
13	PGN_0586	643172..643486 [+], 315	conserved hypothetical protein
14	PGN_0587	643570..644655 [+], 1086	transposase in ISPg1
15	PGN_0588	644756..645304 [+], 549	conserved hypothetical protein
16	PGN_0589	645609..645830 [+], 222	conserved hypothetical protein
17	PGN_0590	646047..647105 [+], 1059	putative Fic family protein
18	PGN_0591	647136..648518 [-], 1383	conserved hypothetical protein
19	traQ	648638..649075 [-], 438	putative conserved protein found in conjugate transposon TraQ
20	traO	649095..649679 [-], 585	putative conserved protein found in conjugate transposon TraO
21	traN	649684..650619 [-], 936	conserved protein found in conjugate transposon TraN
22	traM	650693..652054 [-], 1362	putative conserved protein found in conjugate transposon TraM
23	PGN_0596	652051..652314 [-], 264	conserved hypothetical protein found in conjugate transposon
24	traK	652318..652941 [-], 624	putative conserved protein found in conjugate transposon TraK
25	traJ	652959..653945 [-], 987	conserved transmembrane protein found in conjugate transposon TraJ
26	traI	653966..654589 [-], 624	putative conserved protein found in conjugate transposon TraI	TrbJ, T4SS component
27	PGN_0600	654641..655108 [-], 468	conserved hypothetical protein	TraC_F, T4SS component
28	PGN_0601	655186..655605 [-], 420	conserved hypothetical protein
29	PGN_0602	655769..656854 [+], 1086	transposase in ISPg1
30	PGN_0603	657387..657560 [-], 174	hypothetical protein
31	PGN_0604	657990..658472 [+], 483	ferritin
32	PGN_0605	658720..659805 [-], 1086	transposase in ISPg1

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	23	Fasta

(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PubMed:18524787]