ICEberg
I. Information of ICE
ICEberg ID386
Name CTnPg1-a This is a predicted ICE derived from literature
OrganismPorphyromonas gingivalis ATCC 33277
Size (bp)45100
GC content [Genome] (%)47.66[48.36]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP009380 (complete ICE sequence in this genome)
Replicon chromosome (2354886 bp, BioProject:19051) [NC_010729]
Genome coordinates57961..103060 
Putative oriT region -
Putative relaxase coordinates: 79352..80587; Locus tag: PGN_0075;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of CTnPg1-a is not available.



The graph information of CTnPg1-a components from AP009380
Complete gene list of CTnPg1-a from AP009380
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1PGN_004253288..54142 [-], 855probable phosphatidate cytidylyltransferase
2PGN_004354171..56192 [-], 2022putative transmembrane AAA-metalloprotease FtsH
3PGN_004456393..57496 [-], 1104GTP-binding protein
4PGN_004557515..57679 [-], 165conserved hypothetical protein
5PGN_004658549..58815 [+], 267hypothetical protein
6PGN_004758828..59046 [+], 219conserved hypothetical protein
7PGN_004859059..59475 [+], 417conserved hypothetical protein
8PGN_004959497..60027 [+], 531probable anti-restriction protein
9PGN_005060044..61318 [+], 1275conserved hypothetical protein
10PGN_005161345..61599 [+], 255conserved hypothetical protein
11PGN_005261604..61834 [+], 231hypothetical protein
12PGN_005362092..63318 [+], 1227conserved hypothetical protein
13PGN_005463320..63724 [+], 405hypothetical protein
14PGN_005563785..64300 [-], 516probable lysozyme
15PGN_005664284..64745 [-], 462probable conserved protein found in conjugate transposon
16traP64770..65624 [-], 855probable conserved protein found in conjugate transposon TraP
17PGN_005865624..66208 [-], 585probable conserved protein found in conjugate transposon
18traN66210..67130 [-], 921conserved protein found in conjugate transposon TraN
19traM67169..68536 [-], 1368conserved protein found in conjugate transposon TraM
20PGN_006168487..68819 [-], 333hypothetical protein
21traK68816..69439 [-], 624putative conserved protein found in conjugate transposon TraK
22traJ69459..70535 [-], 1077conserved transmembrane protein found in conjugate transposon TraJ
23traI70538..71167 [-], 630putative conserved protein found in conjugate transposon TraITrbJ, T4SS component 
24traG71302..73803 [-], 2502conserved protein found in conjugate transposon TraG
25traF73800..74177 [-], 378probable conserved transmembrane protein found in conjugate transposon TraF
26traF74182..74481 [-], 300probable conserved transmembrane protein found in conjugate transposon TraE
27PGN_006874657..75244 [-], 588hypothetical protein
28traA75232..75972 [-], 741probable conserved protein found in conjugate transposon TraA
29PGN_007076002..76592 [-], 591hypothetical protein
30PGN_007176589..76942 [-], 354hypothetical protein
31PGN_007276968..77399 [-], 432hypothetical protein
32traA77383..78165 [-], 783putative conserved protein found in conjugate transposon TraA
33PGN_007478954..79367 [+], 414conserved hypothetical protein
34PGN_007579352..80587 [+], 1236conserved hypothetical proteinRelaxase, MOBP Family
35PGN_007680770..82779 [+], 2010putative mobilization protein TraG familyT4CP 
36PGN_007782878..83033 [+], 156hypothetical protein
37PGN_007883075..83287 [+], 213hypothetical protein
38PGN_007983317..84354 [+], 1038conserved hypothetical protein with DUF1016 domain
39PGN_008084397..84723 [-], 327probable tetracycline resistance element mobilization regulatory protein RteC
40PGN_008185010..86368 [-], 1359putative Na driven multidrug efflux pump
41PGN_008286465..87313 [-], 849probable transcriptional regulator AraC family
42PGN_008387598..88992 [+], 1395conserved hypothetical protein
43PGN_008489027..91156 [+], 2130DNA topoisomerase I
44PGN_008591296..91727 [+], 432hypothetical protein
45PGN_008691714..97200 [+], 5487putative DNA methylase
46PGN_008797257..99167 [-], 1911conserved hypothetical protein
47PGN_008899167..99376 [-], 210putative transcriptional regulator
48PGN_008999529..99849 [-], 321hypothetical protein
49PGN_009099833..100186 [-], 354hypothetical protein
50PGN_0091100407..100685 [+], 279hypothetical protein
51PGN_0092100714..101025 [+], 312conserved hypothetical protein
52PGN_0093101075..101440 [-], 366conserved hypothetical protein
53PGN_0094101455..102690 [-], 1236putative bacteriophage integraseIntegrase 
54PGN_0095102733..102882 [-], 150hypothetical protein
55PGN_0096103084..104424 [-], 1341aspartate kinase
56PGN_0097104442..105182 [-], 741putative cell-division ATP-binding protein
57PGN_0098105346..105519 [-], 174hypothetical protein
58PGN_0099105575..106588 [+], 1014probable peptidase
59PGN_0100106598..107746 [+], 1149diaminopimelate decarboxylase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PubMed:18524787]
 

Genomics & Bioinformatics Group in MML, SJTU