The graph information of ICEDda3937-1 components from CP002038 |
![](tmp/plot/CP002038_1811132108_337_3121510_context_S.png) |
Complete gene list of ICEDda3937-1 from CP002038 |
# | Gene ![Inside the ( ) is the newly annonated gene name derived from literature](images/symbol.jpg) | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation ![Reannotated signature proteins by ICEberg](images/symbol.jpg) |
1 | uvrY | 3122038..3122694 [-], 657 | Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS) | |
2 | Dda3937_04643 | 3122809..3123174 [+], 366 | hypothetical protein | |
3 | yecF | 3123345..3123569 [+], 225 | Putative cytoplasmic protein | |
4 | cycA | 3124304..3125707 [+], 1404 | D-serine/D-alanine/glycine transporter | |
5 | Dda3937_04644 | 3125455..3125715 [+], 261 | hypothetical protein | |
6 | Dda3937_03963 | 3125774..3126049 [-], 276 | Nitrogen assimilation control protein | |
7 | Dda3937_00080 | 3126671..3127954 [+], 1284 | Integrase | Integrase |
8 | Dda3937_00079 | 3128109..3128420 [-], 312 | hypothetical protein | TraF, T4SS component |
9 | Dda3937_00100 | 3129435..3130361 [+], 927 | hypothetical protein | |
10 | Dda3937_04645 | 3130907..3131407 [-], 501 | hypothetical protein | |
11 | Dda3937_02773 | 3131418..3135728 [-], 4311 | Rhs-family protein | |
12 | Dda3937_02772 | 3135740..3136147 [-], 408 | hypothetical protein | |
13 | Dda3937_02771 | 3136161..3138014 [-], 1854 | Putative Rhs accessory genetic element | |
14 | Dda3937_02770 | 3138127..3138645 [-], 519 | Hcp | |
15 | Dda3937_02769 | 3138760..3138870 [-], 111 | hypothetical protein | |
16 | Dda3937_04646 | 3139168..3139506 [+], 339 | hypothetical protein | |
17 | Dda3937_02768 | 3139329..3139574 [+], 246 | hypothetical protein | |
18 | Dda3937_02767 | 3139904..3140215 [-], 312 | Putative regulator for maltose metabolism | |
19 | Dda3937_02766 | 3140296..3140550 [+], 255 | DNA-binding protein | |
20 | Dda3937_02765 | 3140638..3140886 [+], 249 | DNA-binding protein | |
21 | Dda3937_02764 | 3140846..3141106 [-], 261 | hypothetical protein | |
22 | Dda3937_02763 | 3141185..3141490 [-], 306 | Putative regulator for maltose metabolism | |
23 | Dda3937_02762 | 3141606..3141884 [+], 279 | Putative transcriptional regulator | |
24 | Dda3937_02761 | 3141998..3142255 [+], 258 | Putative transcriptional regulator | |
25 | Dda3937_04647 | 3142335..3142550 [+], 216 | hypothetical protein | |
26 | Dda3937_04648 | 3142835..3143077 [+], 243 | hypothetical protein | |
27 | alpA | 3142932..3143126 [+], 195 | DNA-binding protein | |
28 | Dda3937_02759 | 3143143..3143727 [+], 585 | hypothetical protein | |
29 | Dda3937_02758 | 3143813..3144094 [-], 282 | hypothetical protein | |
30 | Dda3937_02757 | 3144145..3146025 [+], 1881 | hypothetical protein | |
31 | Dda3937_04649 | 3146131..3146412 [+], 282 | hypothetical protein | |
32 | Dda3937_02756 | 3146655..3146951 [+], 297 | putative ATP/GTP-binding protein remnant | |
33 | virB1 | 3146982..3147668 [+], 687 | VirB1 | VirB1, T4SS component |
34 | virB2 | 3147682..3147963 [+], 282 | Major pilus subunit of type IV secretion complex (VirB2) | VirB2, T4SS component |
35 | virB4 | 3147941..3150721 [+], 2781 | ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4) | VirB4, T4SS component |
36 | virB5 | 3150747..3151463 [+], 717 | Minor pilin of type IV secretion complex (VirB5) | VirB5, T4SS component |
37 | Dda3937_02751 | 3151432..3151698 [+], 267 | hypothetical protein | |
38 | virB6 | 3151710..3152738 [+], 1029 | Integral inner membrane protein of type IV secretion complex (VirB6) | VirB6, T4SS component |
39 | virB7 | 3152826..3152966 [+], 141 | TriF protein | VirB7, T4SS component |
40 | virB8 | 3152959..3153642 [+], 684 | Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB8) | VirB8, T4SS component |
41 | virB9 | 3153639..3154532 [+], 894 | VirB9 | VirB9, T4SS component |
42 | virB10 | 3154529..3155737 [+], 1209 | Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) | VirB10, T4SS component |
43 | virB11 | 3155727..3156743 [+], 1017 | ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11) | VirB11, T4SS component |
44 | kikA | 3156784..3157086 [+], 303 | IncN plasmid KikA protein | |
45 | Dda3937_04650 | 3157169..3157519 [+], 351 | hypothetical protein | |
46 | Dda3937_04293 | 3157741..3159546 [+], 1806 | MobB protein | VirD4, T4SS component |
47 | mobC | 3159555..3160301 [+], 747 | MobC-like protein | |
48 | Dda3937_04167 | 3160534..3161811 [+], 1278 | ISEch11 transposase | |
49 | Dda3937_04168 | 3161932..3162837 [-], 906 | hypothetical protein | |
50 | Dda3937_04169 | 3163024..3163680 [-], 657 | hypothetical protein | |
51 | Dda3937_04347 | 3163984..3164427 [-], 444 | hypothetical protein | |
52 | Dda3937_04348 | 3164636..3164929 [-], 294 | hypothetical protein | |
53 | Dda3937_04170 | 3164896..3165183 [-], 288 | hypothetical protein | |
54 | Dda3937_04349 | 3165251..3165547 [-], 297 | hypothetical protein | |
55 | Dda3937_04171 | 3165550..3165864 [-], 315 | Putative toxin of gyrase inhibiting toxin-antitoxin system | |
56 | Dda3937_04172 | 3165867..3166103 [-], 237 | Putative antitoxin of gyrase inhibiting toxin-antitoxin system | |
57 | Dda3937_04173 | 3166423..3166659 [+], 237 | Transposase | |
58 | Dda3937_04174 | 3167510..3167932 [+], 423 | hypothetical protein | |
59 | Dda3937_04175 | 3167995..3168390 [+], 396 | hypothetical protein | |
60 | Dda3937_04176 | 3168404..3169720 [+], 1317 | hypothetical protein | |
61 | Dda3937_04177 | 3169727..3170605 [+], 879 | putative deoxyribonuclease | |
62 | Dda3937_04178 | 3170602..3171237 [+], 636 | hypothetical protein | |
63 | Dda3937_04179 | 3171273..3174899 [+], 3627 | hemagglutinin protein | |
64 | Dda3937_01879 | 3175283..3187930 [+], 12648 | Predicted cell-wall-anchored protein SasA (LPXTG motif) | |
65 | Dda3937_01878 | 3188250..3188381 [+], 132 | hypothetical protein | |
66 | Dda3937_01877 | 3188368..3188754 [+], 387 | TriL protein | |
67 | Dda3937_01876 | 3188751..3189065 [-], 315 | Putative toxin of gyrase inhibiting toxin-antitoxin system | |
68 | Dda3937_01875 | 3189068..3189304 [-], 237 | Putative antitoxin of gyrase inhibiting toxin-antitoxin system | |
69 | ardC | 3189619..3190644 [-], 1026 | Antirestriction protein | |
70 | Dda3937_04351 | 3190546..3190758 [+], 213 | hypothetical protein | |
71 | Dda3937_01873 | 3191323..3192738 [+], 1416 | hypothetical protein | |
72 | Dda3937_01872 | 3192744..3193010 [+], 267 | ATP-dependent helicase | |
73 | Dda3937_01871 | 3193712..3195214 [-], 1503 | hypothetical protein | |
74 | Dda3937_01870 | 3195352..3195999 [-], 648 | hypothetical protein | |
75 | Dda3937_01869 | 3195996..3197108 [-], 1113 | putative molybdenum cofactor synthesis-step 1 protein isoform 2 | |
76 | Dda3937_01868 | 3197101..3198495 [-], 1395 | Arylsulfatase regulator (Fe-S oxidoreductase) | |
77 | Dda3937_01867 | 3198492..3198812 [-], 321 | hypothetical protein | |
78 | Dda3937_01866 | 3199257..3199775 [-], 519 | hypothetical protein | |
79 | Dda3937_04352 | 3199756..3199980 [-], 225 | hypothetical protein | |
80 | Dda3937_01865 | 3200494..3200760 [+], 267 | ISEch8 OrfA | |
81 | Dda3937_01864 | 3200811..3201029 [+], 219 | ISEch8 OrfB | |
82 | Dda3937_04353 | 3201005..3201229 [+], 225 | hypothetical protein | |
83 | Dda3937_01863 | 3201721..3202968 [+], 1248 | Rhamnosyltransferase I, subunit B | |
84 | ggt | 3203273..3205036 [+], 1764 | Gamma-glutamyltranspeptidase | |