 ICEberg ID | 370 |
Name  | Tn5252(SP1000)  |
| ICEO ID | ICEO_0000710 |
| Organism | Streptococcus pneumoniae SP1000 |
| Size (bp) | - |
| GC content [Genome] (%) | - |
| Insertion site | - |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | L29323; L29324 (partial ICE sequence) |
| Putative oriT region | - |
| Putative relaxase | coordinates: 3070..4365; Locus tag: -; Family: MOBP |
The graph information of Tn5252(SP1000) components from L29323 | |||||
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| Incomplete gene list of Tn5252(SP1000) from L29323 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 71..520 [-], 450 | unknown | ||
| 2 | - | 504..1862 [-], 1359 | methyl transferase | ||
| 3 | - | 1289..1807 [-], 519 | methyl transferase | ||
| 4 | - | 1962..2246 [-], 285 | unknown | ||
The graph information of Tn5252(SP1000) components from L29324 | |||||
 | |||||
| Incomplete gene list of Tn5252(SP1000) from L29324 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 130..1311 [-], 1182 | integrase | Integrase | |
| 2 | - | 1308..1640 [-], 333 | unknown | ||
| 3 | - | 1725..1958 [-], 234 | excisionase | ||
| 4 | - | 2064..2213 [+], 150 | unknown | ||
| 5 | - | 2215..2442 [-], 228 | repressor protein | ||
| 6 | - | 2544..2777 [-], 234 | unknown | ||
| 7 | - | 3070..4365 [-], 1296 | relaxase | Relaxase, MOBP Family | |
| 8 | - | 4352..4717 [-], 366 | unknown | ||
| 9 | - | 4722..5078 [-], 357 | unknown | ||
| 10 | - | 5373..5663 [-], 291 | unknown | ||
| 11 | - | 5653..5964 [-], 312 | unknown | ||
| 12 | - | 6011..7333 [-], 1323 | UmuC MucB homolog | ||
| 13 | - | 7432..8106 [-], 675 | UmuD MucA homolog | ||
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(1) Munoz-Najar U; Vijayakumar MN (1999). An operon that confers UV resistance by evoking the SOS mutagenic response in streptococcal conjugative transposon Tn5252. J Bacteriol. 181(9):2782-8. [PubMed:10217768]
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(2) Sampath J; Vijayakumar MN (1998). Identification of a DNA cytosine methyltransferase gene in conjugative transposon Tn5252. Plasmid. 39(1):63-76. [PubMed:9473447]
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(3) Srinivas P; Kilic AO; Vijayakumar MN (1997). Site-specific nicking in vitro at ori T by the DNA relaxase of Tn5252. Plasmid. 37(1):42-50. [PubMed:9073581]
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(4) Kilic AO; Vijayakumar MN; al-Khaldi SF (1994). Identification and nucleotide sequence analysis of a transfer-related region in the streptococcal conjugative transposon Tn5252. J Bacteriol. 176(16):5145-50. [PubMed:8051031]
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| experimental literature |