ICEberg
I. Information of ICE
ICEberg ID360
Name ICESenTy2-1 This is a putative ICE identified in this study by Blast
OrganismSalmonella enterica subsp. enterica serovar Typhi str. Ty2
Size (bp)131752
GC content [Genome] (%)49.74[52.05]
Insertion sitetRNA-Phe(t4372)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAE014613 (complete ICE sequence in this genome)
Replicon chromosome (4791961 bp, BioProject:371) [NC_004631]
Genome coordinates4394224..4525975 
Putative oriT region -
Putative relaxase coordinates: 4509837..4511426; Locus tag: t4356;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICESenTy2-1 is not available.



The graph information of ICESenTy2-1 components from AE014613
Complete gene list of ICESenTy2-1 from AE014613
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1t42194389499..4389696 [-], 198hypothetical protein
2t42204389719..4390006 [-], 288putative GerE family regulatory protein
3t42214390003..4390878 [-], 876araC family regulatory protein
4t42224391144..4391362 [-], 219hypothetical protein
5t42234391683..4391976 [+], 294conserved hypothetical protein
6t42244391973..4392464 [+], 492putative acetyltransferase
7phoN4392705..4393457 [-], 753nonspecific acid phosphatase precursor
8t42264394302..4395336 [+], 1035hypothetical protein
9t42274395333..4396697 [+], 1365DNA helicase
10t42284396690..4398489 [+], 1800hypothetical protein
11t42294398658..4398963 [+], 306hypothetical protein
12t42304399091..4399672 [+], 582hypothetical protein
13t42314399757..4400314 [+], 558hypothetical protein
14t42324400559..4401902 [+], 1344hypothetical protein
15t42334402488..4403267 [+], 780hypothetical protein
16topB4403378..4405372 [+], 1995topoisomerase B
17t42354406040..4406489 [+], 450hypothetical protein
18t42364406570..4406788 [+], 219hypothetical protein
19ssb4406801..4407337 [+], 537single strand binding protein
20pilL4408518..4409762 [+], 1245putative exported proteinTfc2, T4SS component 
21pilM4409765..4410184 [+], 420putative exported protein
22pilO4411887..4413182 [+], 1296putative pilus assembly protein
23pilP4413280..4413750 [+], 471pilus assembly protein
24pilQ4413760..4415475 [+], 1716nucleotide-binding proteinTraJ_I, T4SS component 
25pilR4415472..4416557 [+], 1086putative membrane protein
26pilS4416557..4417192 [+], 636prepilin
27pilT4417202..4417678 [+], 477putative membrane proteinOrf169_F, T4SS component 
28pilU4417675..4418337 [+], 663prepilin peptidase
29pilV4418334..4419641 [+], 1308prepilin
30rci4419989..4421140 [+], 1152shufflon-specific DNA recombinase
31pilK4421237..4421704 [+], 468putative exported protein
32t42544421916..4422791 [+], 876hypothetical protein
33t42554423298..4424212 [+], 915putative membrane protein
34t42564424231..4424971 [+], 741putative exported proteinTfc3, T4SS component 
35t42574425085..4425636 [+], 552hypothetical proteinTfc4, T4SS component 
36t42584425672..4426172 [+], 501hypothetical proteinTfc5, T4SS component 
37t42594426182..4426751 [+], 570putative membrane protein
38t42604426771..4428861 [+], 2091hypothetical proteinTfc6, T4SS component 
39t42614428858..4429616 [+], 759putative membrane proteinTfc8, T4SS component 
40t42624429835..4430107 [+], 273hypothetical proteinTfc9, T4SS component 
41t42634430107..4430346 [+], 240putative membrane protein
42t42644430376..4430738 [+], 363putative membrane proteinTfc10, T4SS component 
43t42654431119..4431772 [+], 654possible exported proteinTfc12, T4SS component 
44t42664431772..4432671 [+], 900hypothetical proteinTfc13, T4SS component 
45t42684432661..4434139 [+], 1479putative exported proteinTfc14, T4SS component 
46t42674434132..4434575 [+], 444putative lipoproteinTfc15, T4SS component 
47t42694434572..4434991 [+], 420hypothetical proteinTfc16, T4SS component 
48t42704434988..4437411 [+], 2424hypothetical proteinTfc16, T4SS component 
49t42714437566..4437952 [+], 387hypothetical proteinTfc17, T4SS component 
50t42724438107..4438499 [+], 393hypothetical proteinTfc24, T4SS component 
51t42734438496..4439464 [+], 969hypothetical proteinTfc23, T4SS component 
52t42744439479..4440909 [+], 1431hypothetical proteinTfc22, T4SS component 
53t42754440906..4441238 [+], 333putative membrane protein
54t42764441242..4442747 [+], 1506putative membrane proteinTfc19, T4SS component 
55t42774442986..4444233 [+], 1248conserved hypothetical protein
56t42784444245..4444859 [+], 615conserved hypothetical protein
57t42794445070..4445612 [-], 543hypothetical protein
58t42804446878..4447798 [+], 921hypothetical protein
59t42814448315..4448824 [+], 510hypothetical protein
60t42824448920..4449300 [+], 381hypothetical protein
61t42834449766..4450350 [+], 585hypothetical protein
62t42844450347..4450643 [+], 297hypothetical protein
63t42854450721..4451179 [+], 459hypothetical protein
64t42864451268..4453217 [+], 1950hypothetical protein
65t42874453289..4454197 [+], 909hypothetical protein
66t42884454271..4455170 [+], 900hypothetical protein
67t42894455212..4455571 [+], 360conserved hypothetical protein
68t42904455671..4455940 [-], 270hypothetical protein
69samB4456072..4457346 [-], 1275UV protection protein
70t42934457565..4457942 [+], 378hypothetical protein
71t42944458029..4458247 [-], 219putative positive regulator of late gene transcription
72t42954458315..4459415 [-], 1101putative regulator of late gene expression
73t42964459412..4459897 [-], 486putative phage tail protein
74t42974459897..4462677 [-], 2781hypothetical protein
75t42984462670..4462789 [-], 120hypothetical protein
76t42994462804..4463106 [-], 303putative phage tail protein
77t43004463161..4463676 [-], 516probable major tail tube protein
78t43014463686..4464858 [-], 1173probable major tail sheath protein
79sopE4465393..4466115 [+], 723invasion-associated secreted protein
80t43044466313..4466720 [-], 408putative phage tail fiber protein
81t43054466727..4468346 [-], 1620probable phage tail fiber protein
82t43064468343..4468948 [-], 606putative phage tail protein
83t43074468941..4469849 [-], 909probable phage baseplate assembly protein
84t43084469836..4470195 [-], 360phage baseplate assembly protein
85t43094470192..4470770 [-], 579putative phage baseplate assembly protein
86t43104470839..4471285 [-], 447putative phage tail completion protein
87t43124471805..4472230 [-], 426putative regulatory protein
88t43134472230..4472607 [-], 378putative membrane protein
89nucD4472612..4473082 [-], 471putative lysozyme
90nucE4473102..4473317 [-], 216possible secretion protein
91t43164473321..4473524 [-], 204putative phage tail protein
92t43174473524..4473988 [-], 465putative capsid completion protein
93t43184474082..4474732 [-], 651putative phage terminase
94t43194474736..4475800 [-], 1065putative major capsid protein
95t43204475817..4476650 [-], 834putative capsid protein
96t43224476793..4478559 [+], 1767probable terminase subunit
97t43214478556..4479602 [+], 1047probable capsid portal protein
98t43234479651..4480346 [-], 696hypothetical protein
99t43244480366..4481430 [-], 1065hypothetical protein
100t43254481427..4482491 [-], 1065hypothetical protein
101t43264482501..4482719 [-], 219hypothetical protein
102t43284483416..4485824 [-], 2409conserved hypothetical protein
103t43294485815..4486675 [-], 861DNA adenine methylase
104t43304486672..4487256 [-], 585putative exonuclease
105t43314487253..4487480 [-], 228hypothetical protein
106t43324487480..4487713 [-], 234hypothetical protein
107t43334487781..4488122 [-], 342conserved hypothetical protein
108t43344488086..4488286 [-], 201hypothetical protein
109cII4488294..4488803 [-], 510phage regulatory protein
110apl4488836..4489078 [-], 243phage regulatory protein
111cI4489195..4489827 [+], 633phage repressor protein cI
112t43384489831..4490856 [+], 1026phage integraseIntegrase 
113t43404491584..4491697 [+], 114hypothetical protein
114t43414491933..4492220 [+], 288hypothetical protein
115t43424492231..4493121 [+], 891Putative methyltransferase
116yjhP4493121..4493867 [+], 747conserved hypothetical protein
117vexE4494169..4496139 [-], 1971Vi polysaccharide export protein
118vexD4496159..4497463 [-], 1305Vi polysaccharide export inner-membrane protein
119vexC4497486..4498181 [-], 696Vi polysaccharide export ATP-binding protein
120vexB4498207..4499001 [-], 795Vi polysaccharide export inner-membrane protein
121vexA4499011..4500078 [-], 1068Vi polysaccharide export protein
122tviE4500123..4501859 [-], 1737Vi polysaccharide biosynthesis protein TviE
123tviD4501859..4504354 [-], 2496Vi polysaccharide biosynthesis protein
124tviC4504378..4505424 [-], 1047Vi polysaccharide biosynthesis protein, epimerase
125tviB4505427..4506704 [-], 1278Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase
126tviA4506949..4507488 [-], 540Vi polysaccharide biosynthesis protein
127t43544508029..4508217 [+], 189hypothetical protein
128t43554508342..4509853 [+], 1512putative DNA helicaseTraI_F, T4SS component 
129t43564509837..4511426 [+], 1590hypothetical proteinRelaxase, MOBH Family
130t43574511590..4512603 [+], 1014probable phage integrase
131t43584513030..4513323 [+], 294hypothetical protein
132t43594513320..4513808 [+], 489conserved hypothetical protein
133t43604513988..4514440 [-], 453putative membrane protein
134t43614515077..4517362 [-], 2286hypothetical protein
135t43624517443..4519116 [-], 1674putative membrane protein
136t43634519663..4520124 [+], 462hypothetical protein
137cII4520121..4520342 [+], 222transcriptional regulatory protein
138t43654520376..4520519 [-], 144hypothetical protein
139t43664520735..4521061 [-], 327hypothetical protein
140t43674521199..4521981 [+], 783hypothetical protein
141t43684522006..4522218 [-], 213putative membrane protein
142-4522962..4524245 [-], 1284putative membrane protein
143int4524556..4525815 [-], 1260bacteriophage integrase
144yjdC4526166..4526741 [-], 576putative transcriptional regulator
145dsbD4526778..4528481 [-], 1704thiol:disulfide interchange protein DsbD
146cutA4528457..4528804 [-], 348periplasmic divalent cation tolerance protein CutA
147dcuA4528925..4530226 [-], 1302anaerobic C4-dicarboxylate transporter
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins136Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PubMed:22247511] in_silico
(2) Identified as part of this study from AE014613
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU