ICEberg
I. Information of ICE
ICEberg ID358
Name Tn6012 This ICE is derived from experimental literature
ICEO ID ICEO_0000122
OrganismStaphylococcus aureus JCSC6826
Size (bp)13339
GC content [Genome] (%)30.14
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAB435014 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates928..14266 
Putative oriT region -
Putative relaxase coordinates: 11877..12968;   Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of Tn6012 is not available.



The graph information of Tn6012 components from AB435014
Complete gene list of Tn6012 from AB435014
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1mecR154..927 [+], 874-
2tnp1148..2168 [-], 1021-
3-2277..2618 [-], 342hypothetical protein
4-2674..3264 [-], 591hypothetical protein
5-3271..4317 [-], 1047putative traG membrane proteinPrgK, T4SS component 
6-4307..6154 [-], 1848hypothetical membrane proteinYddG, T4SS component 
7-6159..7517 [-], 1359FtsK/SpoIIIE family proteinYdcQ, T4SS component 
8-7571..10066 [-], 2496hypothetical membrane proteinYddE, T4SS component 
9-10101..10484 [-], 384hypothetical membrane proteinYddD, T4SS component 
10-10496..10756 [-], 261hypothetical membrane proteinYddC, T4SS component 
11-10761..11816 [-], 1056hypothetical membrane proteinYddB, T4SS component 
12-11877..12968 [-], 1092replication initiation factor family proteinRelaxase, MOBT Family
13-13143..13445 [-], 303hypothetical protein
14-13459..13779 [-], 321hypothetical protein
15-13930..14214 [-], 285hypothetical protein
16-14361..14858 [+], 498hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins13Fasta
(1) Han X; Ito T; Takeuchi F; Ma XX; Takasu M; Uehara Y; Oliveira DC; de Lencastre H; Hiramatsu K (2009). Identification of a novel variant of staphylococcal cassette chromosome mec, type II.5, and Its truncated form by insertion of putative conjugative transposon Tn6012. Antimicrob Agents Chemother. 53(6):2616-9. [PubMed:19364875] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU