ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	355
Name	ICESa2
Organism	Staphylococcus aureus subsp. aureus ST398
Size (bp)	15304
GC content [Genome] (%)	32.34
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AM990992 (complete ICE sequence in this genome)
Replicon	chromosome (2872582 bp, BioProject:29427) [AM990992]
Genome coordinates	1956986..1972289
Putative oriT region	-
Putative relaxase	coordinates: 1969283..1970113; Locus tag: SAPIG1864; Family: MOB_T

II. ICE interaction with IME/CIME/

The interaction information of ICESa2 is not available.

The graph information of ICESa2 components from AM990992

Complete gene list of ICESa2 from AM990992
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	SAPIG1843	1952509..1952766 [+], 258	conserved hypothetical protein
2	menC	1952763..1953764 [-], 1002	O-succinylbenzoic acid (OSB) synthetase
3	menE	1953769..1955247 [-], 1479	O-succinylbenzoate-CoA ligase
4	SAPIG1845	1955406..1955888 [-], 483	lipoprotein, putative
5	SAPIG1846	1956200..1956427 [+], 228	hypothetical protein
6	SAPIG1847	1956685..1956984 [-], 300	transposase InsI for insertion sequence element IS30B/C/D
7	SAPIG1848	1956986..1957126 [+], 141	hypothetical protein
8	SAPIG1849	1957139..1957669 [-], 531	transposase of
9	SAPIG1850	1957781..1958143 [-], 363	lipoprotein, putative
10	SAPIG1851	1958190..1958783 [-], 594	conserved hypothetical protein
11	SAPIG1852	1958789..1959817 [-], 1029	transfer complex protein TraG	Orf13_p, T4SS component
12	SAPIG1853	1959807..1961738 [-], 1932	membrane protein, putative	YddG, T4SS component
13	SAPIG1854	1961838..1962239 [-], 402	hypothetical protein
14	SAPIG1855	1962244..1963602 [-], 1359	ftsk/spoiiie family protein	YdcQ, T4SS component
15	SAPIG1856	1963607..1963939 [-], 333	hypothetical protein
16	SAPIG1857	1963936..1964166 [-], 231	hypothetical protein
17	SAPIG1858	1964170..1964388 [-], 219	hypothetical protein
18	SAPIG1859	1964400..1966895 [-], 2496	conserved hypothetical protein	YddE, T4SS component
19	SAPIG1860	1966930..1967319 [-], 390	conserved hypothetical protein	YddD, T4SS component
20	SAPIG1861	1967325..1967585 [-], 261	conserved hypothetical protein	YddC, T4SS component
21	SAPIG1862	1967590..1968666 [-], 1077	conserved hypothetical protein	YddB, T4SS component
22	SAPIG1863	1968741..1969103 [-], 363	conserved hypothetical protein
23	SAPIG1864	1969283..1970113 [-], 831	replication initiation factor family protein	Relaxase, MOB_T Family
24	SAPIG1865	1970588..1971013 [-], 426	hypothetical protein
25	SAPIG1866	1971035..1971358 [-], 324	hypothetical protein
26	SAPIG1867	1971879..1972289 [+], 411	excalibur domain protein
27	SAPIG1868	1972370..1973365 [+], 996	conserved hypothetical protein
28	SAPIG1869	1973441..1974067 [+], 627	lipoprotein, putative
29	SAPIG1870	1974108..1974452 [+], 345	conserved hypothetical protein
30	SAPIG1871	1974550..1975122 [+], 573	conserved hypothetical protein
31	SAPIG1872	1975320..1975877 [-], 558	conserved hypothetical protein
32	SAPIG1873	1976248..1976424 [-], 177	conserved hypothetical protein
33	SAPIG1874	1976435..1976818 [-], 384	conserved hypothetical protein
34	SAPIG1875	1976920..1977225 [-], 306	transposase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	20	Fasta

(1) Schijffelen MJ; Boel CH; van Strijp JA; Fluit AC (2010). Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 0.719444444. [PubMed:20546576]