ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	354
Name	ICESa1
Organism	Staphylococcus aureus subsp. aureus ST398
Size (bp)	13373
GC content [Genome] (%)	30.12[32.92]
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AM990992 (complete ICE sequence in this genome)
Replicon	chromosome (2872582 bp, BioProject:29427) [AM990992]
Genome coordinates	74898..88270
Putative oriT region	-
Putative relaxase	coordinates: 85882..86661; Locus tag: SAPIG0081; Family: MOB_T

II. ICE interaction with IME/CIME/

The interaction information of ICESa1 is not available.

The graph information of ICESa1 components from AM990992

Complete gene list of ICESa1 from AM990992
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	SAPIG0063	70210..70470 [+], 261	conserved protein YrkD
2	SAPIG0064	70494..71225 [+], 732	domain of unknown function, putative
3	SAPIG0065	71434..71604 [+], 171	copper P-type ATPase AtkB
4	SAPIG0066	71622..72167 [+], 546	lipoprotein, putative
5	SAPIG0067	72448..74238 [+], 1791	hypothetical protein
6	SAPIG0068	74279..74932 [+], 654	hypothetical protein
7	SAPIG0069	75118..75471 [-], 354	transposase InsI for insertion sequence element IS30B/C/D	Integrase
8	SAPIG0070	75635..76138 [-], 504	N-region of transposase of
9	SAPIG0071	76247..76603 [-], 357	lipoprotein, putative
10	SAPIG0072	76659..77249 [-], 591	conserved hypothetical protein
11	SAPIG0073	77256..78302 [-], 1047	transfer complex protein TraG	PrgK, T4SS component
12	SAPIG0074	78292..80160 [-], 1869	membrane protein, putative	YddG, T4SS component
13	SAPIG0075	80165..81403 [-], 1239	ftsk/spoiiie family protein	YdcQ, T4SS component
14	SAPIG0076	81406..81522 [-], 117	ftsk/spoiiie family protein	YdcQ, T4SS component
15	SAPIG0077	81576..84071 [-], 2496	conserved hypothetical protein	YddE, T4SS component
16	SAPIG0078	84106..84489 [-], 384	conserved hypothetical protein	YddD, T4SS component
17	SAPIG0079	84501..84761 [-], 261	conserved hypothetical protein	YddC, T4SS component
18	SAPIG0080	84766..85821 [-], 1056	conserved hypothetical protein	YddB, T4SS component
19	SAPIG0081	85882..86661 [-], 780	replication initiation factor family protein	Relaxase, MOB_T Family
20	SAPIG0082	86658..86828 [-], 171	replication initiation factor family protein
21	SAPIG0083	87147..87449 [-], 303	conserved hypothetical protein
22	SAPIG0084	87463..87783 [-], 321	conserved hypothetical protein
23	SAPIG0085	87934..88218 [-], 285	conserved hypothetical protein
24	SAPIG0086	88318..88812 [+], 495	conserved hypothetical protein
25	SAPIG0087	89066..91270 [+], 2205	trans-Golgi membrane protein p230
26	SAPIG0088	91501..91725 [+], 225	transposase for insertion sequence element E
27	SAPIG0089	91737..92735 [+], 999	transposase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	17	Fasta

(1) Schijffelen MJ; Boel CH; van Strijp JA; Fluit AC (2010). Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 0.719444444. [PubMed:20546576]