ICEberg
I. Information of ICE
ICEberg ID332
Name ICE(Tn4371)6069 This is a predicted ICE derived from literature
OrganismPseudomonas aeruginosa UCBPP-PA14
Size (bp)43172
GC content [Genome] (%)65.54
Insertion site-
Functionczc metal resistance pumps
Species that ICE can be transferred to-
Nucleotide SequenceCP000438 (complete ICE sequence in this genome)
Replicon chromosome (6537648 bp, BioProject:386) [NC_008463]
Genome coordinates2678435..2721213 
Putative oriT region -
Putative relaxase coordinates: 2701170..2703530; Locus tag: PA14_31070;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6069 is not available.



The graph information of ICE(Tn4371)6069 components from CP000438
Complete gene list of ICE(Tn4371)6069 from CP000438
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1PA14_308302674712..2676055 [-], 1344putative two-component response regulator
2PA14_308402676132..2677544 [+], 1413putative signal transduction histidine kinase
3trbI2678435..2679706 [-], 1272TrbI-like proteinTrbI, T4SS component 
4trbG2679709..2680698 [-], 990TrbG-like proteinTrbG, T4SS component 
5trbF2680695..2681399 [-], 705TrbF-like proteinTrbF, T4SS component 
6trbL2681412..2682782 [-], 1371TrbG-like proteinTrbL, T4SS component 
7PA14_308902682980..2683123 [+], 144hypothetical protein
8trbJ2683111..2683836 [-], 726TrbJ-like proteinTrbJ, T4SS component 
9trbE2683833..2686286 [-], 2454TrbE-like proteinTrbE, T4SS component 
10trbC2686568..2686960 [-], 393TrbC-like proteinTrbC, T4SS component 
11trbB2686957..2688027 [-], 1071putative conjugal transfer proteinTrbB, T4SS component 
12PA14_309502688024..2688488 [-], 465conserved hypothetical protein
13traG2688485..2690485 [-], 2001TraG-like proteinVirD4, T4SS component 
14bphR2691005..2692000 [-], 996putative transcriptional regulator
15PA14_309802692127..2692432 [-], 306hypothetical protein
16PA14_309902692483..2693151 [-], 669hypothetical protein
17PA14_310002693164..2693907 [-], 744hypothetical protein
18PA14_310102693904..2697041 [-], 3138putative cation efflux system protein
19PA14_310302697052..2698281 [-], 1230putative cation efflux system protein
20PA14_310402698278..2699525 [-], 1248putative cation efflux system protein
21PA14_310502699666..2700664 [-], 999hypothetical protein
22PA14_310602700661..2701278 [-], 618hypothetical protein
23PA14_310702701170..2703530 [-], 2361conserved hypothetical proteinRelaxase, MOBL Family
24PA14_310802703604..2704179 [-], 576putative conjugal transfer proteinTraF, T4SS component 
25PA14_310902704176..2705093 [-], 918conserved hypothetical protein
26PA14_311002705011..2705649 [-], 639putative plasmid partitioning protein
27PA14_311102705903..2707231 [-], 1329putative replication initiator and transcriptional repressor protein
28PA14_311302707180..2707950 [-], 771conserved hypothetical protein
29PA14_311502708294..2708695 [-], 402hypothetical protein
30PA14_311602708860..2709183 [+], 324hypothetical protein
31PA14_311702709230..2709337 [+], 108hypothetical protein
32PA14_311802709577..2710638 [-], 1062hypothetical proteinTraF, T4SS component 
33PA14_311902710945..2712999 [-], 2055conserved hypothetical protein
34PA14_312002713081..2713905 [-], 825conserved hypothetical protein
35PA14_312202714625..2714903 [-], 279hypothetical protein
36PA14_312302714969..2715496 [-], 528hypothetical protein
37PA14_312402715633..2716943 [-], 1311putative nrbE-like protein
38PA14_312502717346..2717738 [-], 393hypothetical protein
39PA14_312602718015..2718521 [-], 507RadC-like protein
40PA14_312702718848..2720011 [-], 1164conserved hypothetical protein
41PA14_312802720008..2721213 [-], 1206putative integraseIntegrase 
42pa1L2721861..2722229 [+], 369PA-I galactophilic lectin
43PA14_313002722503..2722844 [+], 342hypothetical protein
44PA14_313102722963..2723370 [+], 408hypothetical protein
45PA14_313302723429..2724928 [-], 1500putative EAL domain
46PA14_313402725301..2725657 [+], 357hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins39Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PubMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU