ICEberg
I. Information of ICE
ICEberg ID317
Name Tn2008 This is a predicted ICE derived from literature
OrganismStreptococcus pneumoniae CGSP14
Size (bp)67632
GC content [Genome] (%)33.97[39.46]
Insertion site-
FunctionChloramphenicol, erythromycin, streptothricin and kanamycin resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP001033 (complete ICE sequence in this genome)
Replicon chromosome (2209198 bp, BioProject:29179) [NC_010582]
Genome coordinates1259712..1327343 
Putative oriT region -
Putative relaxase coordinates: 1308999..1310417; Locus tag: SPCG_1322;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of Tn2008 is not available.



The graph information of Tn2008 components from CP001033
Complete gene list of Tn2008 from CP001033
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1SPCG_12731255821..1259432 [-], 3612glutamate dehydrogenase
2SPCG_12741259712..1260899 [-], 1188site-specific recombinaseIntegrase 
3SPCG_12751260871..1261179 [-], 309hypothetical protein
4SPCG_12761261741..1263570 [-], 1830Tn5252, relaxase
5SPCG_12771263557..1263922 [-], 366Tn5252, Orf 9 protein
6SPCG_12781263927..1264283 [-], 357Tn5252, Orf 10 protein
7SPCG_12791264667..1264921 [-], 255hypothetical protein
8SPCG_12801264987..1268991 [-], 4005DNA-dependent ATPase I and helicase II
9SPCG_12811269113..1269499 [-], 387hypothetical protein
10SPCG_12821269571..1270521 [-], 951hypothetical protein
11SPCG_12831270606..1271724 [-], 1119hypothetical protein
12SPCG_12841271986..1273821 [-], 1836hypothetical protein
13SPCG_12851274199..1274477 [-], 279hypothetical protein
14SPCG_12861274452..1275156 [-], 705phosphoserine phosphatase
15SPCG_12871275209..1275775 [-], 567hypothetical protein
16SPCG_12881275868..1276092 [-], 225hypothetical protein
17SPCG_12891276181..1276798 [-], 618hypothetical protein
18SPCG_12901277120..1277842 [-], 723hypothetical protein
19SPCG_12911278159..1279094 [+], 936putative replication initiation protein Rep(RC)
20SPCG_12921279959..1280609 [-], 651chloramphenicol acetyltransferase
21SPCG_12931280780..1281028 [-], 249hypothetical protein
22SPCG_12941281267..1282055 [-], 789hypothetical protein
23SPCG_12951282531..1283289 [-], 759hypothetical protein
24SPCG_12961283289..1283765 [-], 477transcriptional regulator, putative
25SPCG_12971283835..1284107 [-], 273hypothetical protein
26SPCG_12981284145..1284528 [-], 384hypothetical protein
27SPCG_12991284525..1284758 [-], 234hypothetical protein
28SPCG_13001284809..1285894 [-], 1086hypothetical protein
29SPCG_13011285904..1286545 [-], 642parvulin-like peptidyl-prolyl isomerasePrgL, T4SS component 
30SPCG_13021286705..1286902 [+], 198hypothetical protein
31SPCG_13031286916..1287233 [-], 318hypothetical protein
32SPCG_13041287226..1287510 [-], 285hypothetical protein
33SPCG_13051287585..1293818 [-], 6234SNF2 family protein
34SPCG_13061293851..1294261 [-], 411hypothetical protein
35SPCG_13071294413..1295108 [-], 696hypothetical protein
36SPCG_13081295217..1298030 [-], 2814hypothetical proteinPrgK, T4SS component 
37SPCG_13091298042..1300357 [-], 2316hypothetical proteinPrgJ, T4SS component 
38SPCG_13101300347..1300709 [-], 363hypothetical protein
39SPCG_13111300763..1301617 [-], 855hypothetical proteinPrgH, T4SS component 
40SPCG_13121301634..1301876 [-], 243hypothetical protein
41SPCG_13131301897..1303777 [-], 1881hypothetical protein
42SPCG_13141303774..1304283 [-], 510hypothetical protein
43SPCG_13151304252..1304551 [-], 300hypothetical protein
44SPCG_13161304834..1305670 [-], 837hypothetical protein
45SPCG_13171305670..1306314 [-], 645hypothetical protein
46SPCG_13181306549..1306668 [+], 120hypothetical protein
47SPCG_13191306691..1307005 [+], 315hypothetical protein
48SPCG_13201307021..1307407 [+], 387hypothetical protein
49SPCG_13211307436..1308821 [+], 1386hypothetical proteinOrf21_Tn, T4SS component 
50SPCG_13221308999..1310417 [+], 1419hypothetical proteinRelaxase, MOBT Family
51SPCG_13231310674..1311459 [+], 786erythromycin ribosome methylase
52SPCG_13241311797..1312339 [+], 543streptothricin acetyltransferase
53SPCG_13251312432..1313226 [+], 795aminoglycoside phosphotransferase type III
54SPCG_13261314404..1314643 [+], 240omega2 protein
55SPCG_13271314900..1315637 [+], 738rRNA methylase
56SPCG_13281315992..1316546 [+], 555resolvase
57SPCG_13291316550..1319468 [+], 2919transposase
58SPCG_13301319524..1319763 [-], 240hypothetical protein
59SPCG_13311320259..1320690 [+], 432hypothetical protein
60SPCG_13321320687..1320917 [+], 231hypothetical protein
61SPCG_13331321378..1321581 [+], 204hypothetical protein
62SPCG_13341321663..1322625 [+], 963hypothetical protein
63SPCG_13351322622..1322879 [+], 258hypothetical protein
64SPCG_13361323094..1323681 [-], 588hypothetical protein
65SPCG_13371323684..1323917 [-], 234hypothetical protein
66SPCG_13381324303..1324752 [-], 450hypothetical protein
67SPCG_13391324736..1326094 [-], 1359type II DNA modification methyltransferase Spn5252IP
68SPCG_13401326193..1326972 [-], 780replication initiator A, N-terminal
69SPCG_13411326969..1327142 [-], 174hypothetical protein
70SPCG_13421327118..1327264 [+], 147hypothetical protein
71rplL1327330..1327731 [+], 40250S ribosomal protein L7/L12
72rplJ1327788..1328351 [-], 56450S ribosomal protein L10
73trzA1328538..1330004 [-], 1467chlorohydrolase
74SPCG_13461330099..1331886 [-], 1788ABC transporter, ATP-binding/permease protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins69Fasta
(1) Ding F; Tang P; Hsu MH; Cui P; Hu S; Yu J; Chiu CH (2009). Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14. BMC Genomics. 0.526388889. [PubMed:19361343]
 

Genomics & Bioinformatics Group in MML, SJTU