ICEberg
I. Information of ICE
ICEberg ID289
Name ICELm1 This is a predicted ICE derived from literature
OrganismListeria monocytogenes EGD-e
Size (bp)18234
GC content [Genome] (%)36.2
Insertion site3' End of a gene encoding a GMP synthase
FunctionPutative cadmium resistance
Species that ICE can be transferred to-
Nucleotide SequenceAL591824 (complete ICE sequence in this genome)
Replicon chromosome (2944528 bp, BioProject:276) [NC_003210]
Genome coordinates1131501..1149734 
Putative oriT region -
Putative relaxase coordinates: 1146228..1147412; Gene: lmo1111;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICELm1 is not available.



The graph information of ICELm1 components from AL591824
Complete gene list of ICELm1 from AL591824
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1lmo10921126704..1128194 [+], 1491-
2lmo10931128206..1129030 [+], 825-
3lmo10941129043..1129351 [+], 309-
4lmo10951129412..1129816 [+], 405-
5guaA1129945..1131501 [+], 1557-
6lmo10971131558..1132760 [-], 1203-Integrase 
7lmo10981133466..1133696 [-], 231-
8lmo10991133698..1134117 [-], 420-
9cadA1134472..1136595 [-], 2124cadmium resistance protein
10lmo11011136900..1137400 [+], 501-
11lmo11021137533..1137868 [-], 336-
12lmo11031137997..1138914 [-], 918-Orf13_Tn, T4SS component 
13lmo11041138930..1139940 [-], 1011-Orf14_Tn, T4SS component 
14lmo11051139940..1142099 [-], 2160-Orf15_Tn, T4SS component 
15lmo11061142099..1144549 [-], 2451-Orf16_Tn, T4SS component 
16lmo11071144533..1144928 [-], 396-Orf17_Tn, T4SS component 
17lmo11081145211..1145711 [-], 501-
18lmo11091145723..1145944 [-], 222-Orf19_Tn, T4SS component 
19lmo11101145941..1146231 [-], 291-
20lmo11111146228..1147412 [-], 1185-Relaxase, MOBT Family
21lmo11121147603..1149003 [-], 1401-Orf21_Tn, T4SS component 
22lmo11131149011..1149385 [-], 375-
23lmo11141149406..1149720 [-], 315-
24lmo11151149887..1152475 [-], 2589-
25lmo11161153010..1153783 [+], 774-
26lmo11171153848..1154204 [+], 357-
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins18Fasta
(1) Burrus V; Pavlovic G; Decaris B; Guedon G (2002). The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration. Plasmid. 48(2):77-97. [PubMed:12383726] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU