ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	230
Name	ICESp23FST81
Organism	Streptococcus pneumoniae ATCC 700669
Size (bp)	81016
GC content [Genome] (%)	34.26[39.49]
Insertion site	the 3' end of rplL (SPN23F_13190)
Function	Tetracycline and chloramphenicol resistance; Toxin-antitoxin system
Species that ICE can be transferred to	-
Nucleotide Sequence	FM211187 (complete ICE sequence in this genome)
Replicon	chromosome (2221315 bp, BioProject:31233) [NC_011900]
Genome coordinates	1207785..1288800
Putative oriT region	-
Putative relaxase	coordinates: 1269128..1270333; Locus tag: SPN23F12970; Family: MOB_T

II. ICE interaction with IME/CIME/

The interaction information of ICESp23FST81 is not available.

The graph information of ICESp23FST81 components from FM211187

Complete gene list of ICESp23FST81 from FM211187
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	SPN23F12340	1205229..1205366 [-], 138	putative uncharacterized protein
2	SPN23F12350	1205568..1206155 [-], 588	putative membrane protein
3	SPN23F12360	1206158..1206391 [-], 234	putative uncharacterized protein (pseudogene)
4	SPN23F12370	1206404..1206784 [-], 381	putative uncharacterized protein
5	SPN23F12380	1206777..1207100 [-], 324	putative uncharacterized protein
6	SPN23F12390	1207108..1207362 [-], 255	putative replication initiator protein
7	SPN23F12400	1207362..1207532 [-], 171	conserved hypothetical protein
8	SPN23F12410	1207785..1208972 [-], 1188	integrase	Integrase
9	SPN23F12420	1208944..1209213 [-], 270	conserved hypothetical protein
10	SPN23F12430	1209814..1211643 [-], 1830	relaxase
11	SPN23F12440	1211630..1211995 [-], 366	putative mobilisation protein
12	SPN23F12450	1212000..1212356 [-], 357	putative mobilisation protein
13	SPN23F12460	1212740..1212994 [-], 255	putative uncharacterized protein
14	SPN23F12470	1213060..1217064 [-], 4005	putative DNA helicase II, UvrD
15	SPN23F12480	1217186..1217572 [-], 387	hypothetical protein
16	SPN23F12490	1217644..1218594 [-], 951	putative uncharacterized protein
17	SPN23F12500	1218679..1219797 [-], 1119	putative uncharacterized protein
18	SPN23F12510	1220059..1221855 [-], 1797	putative NTPase protein
19	SPN23F12520	1222272..1222538 [-], 267	hypothetical protein
20	SPN23F12530	1222525..1223229 [-], 705	putative phosphoserine phosphatase
21	SPN23F12540	1223282..1223848 [-], 567	hypothetical protein
22	SPN23F12550	1223941..1224165 [-], 225	hypothetical protein
23	SPN23F12560	1224254..1224871 [-], 618	hypothetical protein
24	SPN23F12570	1225193..1225915 [-], 723	putative uncharacterized protein
25	rep	1226244..1227167 [+], 924	replication protein
26	SPN23F12590	1228032..1228682 [-], 651	putative chloramphenicol acetyltransferase
27	SPN23F12600	1228853..1229101 [-], 249	putative uncharacterized protein
28	SPN23F12610	1229340..1230128 [-], 789	putative uncharacterized protein
29	SPN23F12620	1230604..1231362 [-], 759	zeta toxin
30	SPN23F12630	1231362..1231838 [-], 477	putative epsilon antitoxin
31	SPN23F12640	1231908..1232180 [-], 273	putative uncharacterized protein
32	SPN23F12650	1232218..1232601 [-], 384	putative uncharacterized protein
33	SPN23F12660	1232598..1232831 [-], 234	putative uncharacterized protein
34	SPN23F12670	1232882..1233967 [-], 1086	putative uncharacterized protein
35	SPN23F12680	1233977..1234618 [-], 642	putative uncharacterized protein	PrgL, T4SS component
36	SPN23F12690	1234839..1236962 [-], 2124	putative lantibiotic transport/processing ATP-binding protein
37	SPN23F12700	1236969..1240220 [-], 3252	putative lantibiotic synthetase
38	SPN23F12701	1240303..1240518 [-], 216	putative lantibiotic precursor
39	SPN23F12710	1240663..1241343 [-], 681	putative lantibiotic ABC transporter
40	SPN23F12720	1241392..1242132 [-], 741	putative lantibiotic ABC transporter
41	SPN23F12730	1242125..1243060 [-], 936	putative lantibiotic ABC transporter, ATP-binding protein
42	SPN23F12740	1243238..1243411 [-], 174	putative membrane protein
43	SPN23F12750	1243602..1244462 [+], 861	transcriptional regulator
44	SPN23F12760	1244545..1244835 [-], 291	putative membrane protein
45	SPN23F12770	1244849..1245133 [-], 285	putative uncharacterized protein
46	SPN23F12780	1245208..1253932 [-], 8725	putative conjugative transposon DNA recombination protein
47	SPN23F12790	1246260..1248071 [-], 1812	putative group II intron reverse transcriptase/maturase
48	SPN23F12820	1253980..1254390 [-], 411	putative uncharacterized protein (pseudogene)
49	SPN23F12830	1254542..1255108 [-], 567	putative uncharacterized protein
50	SPN23F12840	1255346..1258159 [-], 2814	putative conjugal transfer protein	PrgK, T4SS component
51	SPN23F12850	1258171..1260486 [-], 2316	putative conjugal transfer protein	PrgJ, T4SS component
52	SPN23F12860	1260476..1260838 [-], 363	putative uncharacterized protein
53	SPN23F12870	1260892..1261746 [-], 855	putative uncharacterized protein	PrgH, T4SS component
54	SPN23F12880	1261763..1262005 [-], 243	putative uncharacterized protein
55	traG	1262026..1263906 [-], 1881	putative conjugal transfer protein TraG
56	SPN23F12900	1263903..1264391 [-], 489	putative uncharacterized protein
57	SPN23F12910	1264381..1264680 [-], 300	putative uncharacterized protein
58	SPN23F12920	1264963..1265799 [-], 837	conserved hypothetical protein
59	SPN23F12930	1265799..1266389 [-], 591	conserved hypothetical protein
60	orf23	1266820..1267134 [+], 315	conjugative transposon protein
61	orf22	1267153..1267536 [+], 384	conjugative transposon protein
62	orf21	1267565..1268950 [+], 1386	conjugative transposon FtsK/SpoIIIE-family protein	Orf21_Tn, T4SS component
63	orf20	1269128..1270333 [+], 1206	putative conjugative transposon replication initiation factor	Relaxase, MOB_T Family
64	orf19	1270376..1270597 [+], 222	conjugative transposon protein	Orf19_Tn, T4SS component
65	orf18	1270714..1271211 [+], 498	conjugative transposon protein
66	orf17	1271462..1271692 [+], 231	putative conjugative transposon membrane protein	Orf17_Tn, T4SS component
67	orf16	1271676..1274123 [+], 2448	conjugative transposon ATP/GTP-binding protein	Orf16_Tn, T4SS component
68	orf15	1274126..1276276 [+], 2151	conjugative transposon membrane protein	Orf15_Tn, T4SS component
69	orf14	1276295..1277296 [+], 1002	putative cell wall hydrolase	Orf14_Tn, T4SS component
70	orf13	1277311..1278225 [+], 915	putative conjugative transposon exported protein	Orf13_Tn, T4SS component
71	tetM	1278602..1280521 [+], 1920	conjugative transposon tetracycline resistance protein
72	orf9	1280867..1281220 [-], 354	putative conjugative transposon regulatory protein
73	SPN23F13061	1281350..1281496 [+], 147	putative uncharacterized protein
74	orf7	1281725..1282147 [+], 423	putative conjugative transposon regulatory protein
75	xis	1282835..1283038 [+], 204	excisionase
76	SPN23F13090	1283120..1284336 [+], 1217	putative integrase (pseudogene)
77	SPN23F13110	1284551..1285138 [-], 588	putative CAAX amino terminal protease
78	SPN23F13120	1285141..1285374 [-], 234	putative uncharacterized protein
79	SPN23F13130	1285387..1285767 [-], 381	putative uncharacterized protein
80	SPN23F13140	1285760..1286209 [-], 450	putative uncharacterized protein
81	SPN23F13150	1286193..1287551 [-], 1359	putative DNA methylase
82	SPN23F13160	1287650..1288429 [-], 780	putative replication initiator protein
83	SPN23F13170	1288426..1288599 [-], 174	putative uncharacterized protein
84	rplL	1288801..1289169 [-], 369	50S ribosomal protein L7/L12
85	rplJ	1289245..1289745 [-], 501	50S ribosomal protein L10
86	SPN23F13210	1289995..1291254 [-], 1260	probable amidohydrolase
87	SPN23F13220	1291601..1293349 [-], 1749	ABC transporter ATP-binding membrane protein

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	74	Fasta

(1) Croucher NJ; Walker D; Romero P; Lennard N; Paterson GK; Bason NC; Mitchell AM; Quail MA; Andrew PW; Parkhill J; Bentley SD; Mitchell TJ (2009). Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol. 191(5):1480-9. [PubMed:19114491]