ICEberg

ICE
Gene list
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I. Information of ICE

ICEberg ID	222
Name	ICE-GI6
ICEO ID	ICEO_0000105
Organism	Bordetella petrii DSM 12804
Size (bp)	159097
GC content [Genome] (%)	61.15[65.48]
Insertion site	tRNA-Gly (tRNA-44)
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AM902716 (complete ICE sequence in this genome)
Replicon	chromosome (5287950 bp, BioProject:28135) [NC_010170]
Genome coordinates	4417743..4576839
Putative oriT region	-
Putative relaxase	coordinates: 4515132..4516985; Locus tag: Bpet4254; Family: MOB_H

II. ICE interaction with IME/CIME/

The interaction information of ICE-GI6 is not available.

The graph information of ICE-GI6 components from AM902716

Complete gene list of ICE-GI6 from AM902716
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	pntA2	4412947..4414566 [+], 1620	NAD(P) transhydrogenase subunit alpha
2	pntB2	4414595..4416010 [+], 1416	NAD(P) transhydrogenase subunit beta
3	Bpet4172	4416066..4417025 [-], 960	transcriptional regulator, LysR-family
4	Bpet4173	4417207..4417665 [+], 459	transcriptional regulator, AsnC family
5	Bpet4174	4417928..4418830 [-], 903	transcriptional regulator, LysR-family
6	Bpet4175	4419232..4420140 [+], 909	-
7	Bpet4176	4420153..4423053 [+], 2901	DNA-dependent ATPase, SNF2 family protein
8	Bpet4177	4423067..4423618 [+], 552	hypothetical protein
9	Bpet4178	4423618..4423887 [+], 270	-
10	Bpet4179	4424048..4425028 [+], 981	ISPssy, transposase
11	lpsJ2	4425176..4425814 [+], 639	3-oxoacid CoA-transferase subunit B
12	fadA9	4425859..4427028 [+], 1170	-
13	Bpet4182	4427191..4427580 [-], 390	transposase IS4 family
14	Bpet4183	4427550..4427957 [-], 408	putative transposase
15	Bpet4184	4428521..4429150 [-], 630	Putative HTH-type transcriptional regulator, AcrR-family
16	Bpet4185	4429152..4429826 [-], 675	transcriptional regulator, TetR-family
17	Bpet4186	4429847..4430698 [-], 852	conserved hypothetical protein
18	cusC2	4430706..4432169 [-], 1464	probable outer membrane efflux protein
19	Bpet4188	4432166..4435297 [-], 3132	AcrB/AcrD/AcrF family protein	AR
20	Bpet4189	4435307..4436482 [-], 1176	multidrug resistance protein
21	Bpet4190	4436701..4437291 [+], 591	transcriptional regulator, TetR family
22	Bpet4191	4437349..4438071 [+], 723	transcriptional regulator, TetR-family
23	Bpet4192	4438117..4438551 [-], 435	hypothetical protein predicted by Glimmer/Critica
24	Bpet4193	4438618..4439022 [-], 405	Conserved secreted protein, UPF0065 family
25	Bpet4194	4439208..4440581 [-], 1374	hypothetical protein
26	Bpet4195	4440617..4441396 [-], 780	2-hydroxymuconic semialdehyde hydrolase
27	Bpet4196	4441393..4442298 [-], 906	fumarylacetoacetate hydrolase family protein
28	Bpet4197	4442401..4443177 [+], 777	transcriptional regulator, GntR-family
29	Bpet4198	4443235..4444233 [+], 999	aldo/keto reductase
30	Bpet4199	4444256..4445074 [-], 819	putative exported protein
31	Bpet4200	4445138..4445866 [-], 729	transposase IS4 family
32	Bpetpseudo_15	4445946..4447394 [-], 1449	pseudogene	Tfc6, T4SS component
33	Bpet4203	4447180..4447851 [-], 672	conserved hypothetical protein	Tfc6, T4SS component
34	Bpet4204	4447856..4448401 [-], 546	conserved hypothetical protein	Tfc4, T4SS component
35	Bpet4205	4448383..4448748 [-], 366	conserved protein	Tfc3, T4SS component
36	Bpet4206	4448745..4450142 [-], 1398	amine oxidase, flavin-containing
37	fhuC`	4450350..4450571 [-], 222	pseudogene
38	fhuC`	4450541..4451134 [-], 594	pseudogene
39	Bpet4207	4451137..4452837 [-], 1701	ABC transporter ATP-binding protein
40	fhuB	4452834..4454837 [-], 2004	ferrichrome transport protein FhuB precursor
41	fhuD	4454840..4455850 [-], 1011	ABC transporter, substrate binding protein
42	Bpet4210	4455865..4458099 [-], 2235	TonB-dependent outer membrane receptor
43	Bpet4211	4458335..4459066 [+], 732	transcriptional regulator, AraC family
44	Bpet4212	4459087..4462053 [-], 2967	-
45	ssb5	4462263..4462775 [-], 513	-
46	Bpet4214	4463373..4465010 [-], 1638	conserved hypothetical protein
47	Bpet4215	4465003..4465263 [-], 261	conserved hypothetical protein
48	parA4	4465247..4465990 [-], 744	hypothetical protein
49	Bpet4217	4466229..4466879 [+], 651	transcriptional regulator, TetR family
50	Bpet4218	4466979..4467413 [+], 435	hypothetical protein
51	Bpet4219	4467479..4468015 [-], 537	transcriptional regulator, TetR family
52	Bpet4220	4468177..4469214 [-], 1038	putative octaprenyl-diphosphate synthase
53	Bpet4221	4469495..4469962 [+], 468	putative transcriptional regulator, MarR family
54	Bpet4222	4470620..4471867 [-], 1248	putative drug resistance transporter, Bcr/CflA family
55	rob	4472393..4473199 [-], 807	transcriptional regulator, AraC family
56	Bpet4224	4473552..4474169 [-], 618	transcriptional regulator, LysR-family
57	Bpet4225	4474277..4474561 [+], 285	conserved hypothetical protein, DNA-binding
58	Bpet4226	4474588..4475481 [-], 894	transcriptional regulator, LysR family
59	Bpet4227	4476812..4477657 [-], 846	conserved hypothetical protein
60	Bpet4228	4477751..4479223 [-], 1473	probable outer membrane efflux protein
61	mexD	4479241..4479891 [-], 651	putative efflux system transmembrane protein
62	Bpet4230	4480017..4480658 [-], 642	transcriptional regulator, LysR family
63	Bpet4231	4480780..4481085 [+], 306	predicted transcriptional regulator
64	Bpet4232	4481123..4482013 [-], 891	transcriptional regulator, LysR family
65	Bpet4233	4482293..4483201 [+], 909	-
66	Bpet4234	4483214..4486447 [+], 3234	DNA-dependent ATPase, SNF2 family protein
67	Bpet4235	4486444..4487259 [+], 816	hypothetical protein
68	mod	4487301..4489199 [+], 1899	type III restriction system methylase
69	res	4489211..4492216 [+], 3006	type III restriction enzyme
70	Bpet4238	4492297..4493031 [+], 735	hypothetical protein
71	Bpet4239	4493031..4493300 [+], 270	hypothetical protein predicted by Glimmer/Critica
72	Bpet4240	4493317..4494267 [+], 951	-
73	Bpet4241	4494253..4494795 [-], 543	putative transposase
74	Bpet4242	4495314..4495805 [-], 492	putative transposase
75	Bpet4243	4495912..4496289 [+], 378	hypothetical protein predicted by Glimmer/Critica
76	Bpet4244	4496286..4496630 [+], 345	hypothetical protein predicted by Glimmer/Critica
77	Bpet4245	4496850..4499525 [+], 2676	hypothetical conserved protein
78	Bpet4246	4499522..4501285 [+], 1764	conserved hypothetical protein
79	Bpet4247	4501282..4501770 [+], 489	hypothetical protein predicted by Glimmer/Critica
80	Bpet4248	4501767..4502483 [+], 717	conserved hypothetical protein
81	Bpet4249	4502476..4503819 [+], 1344	putative protein kinase
82	Bpet4250	4503816..4507196 [+], 3381	hypothetical protein
83	Bpet4251	4507190..4509130 [+], 1941	hypothetical protein predicted by Glimmer/Critica
84	Bpet4252	4509133..4511769 [+], 2637	conserved hypothetical protein
85	Bpet4253	4512615..4515101 [+], 2487	hypothetical protein
86	Bpet4254	4515132..4516985 [-], 1854	putative helicase	Relaxase, MOB_H Family
87	Bpet4255	4517283..4517600 [+], 318	probable suppressor protein
88	Bpet4256	4517600..4518058 [+], 459	hypothetical protein
89	Bpet4257	4518086..4518445 [+], 360	putative membrane protein
90	Bpet4258	4518452..4519975 [-], 1524	conserved Hypothetical protein	Tfc19, T4SS component
91	Bpet4259	4519991..4520362 [-], 372	hypothetical protein predicted by Glimmer/Critica
92	Bpet4260	4520359..4521765 [-], 1407	conserved hypothetical protein	Tfc22, T4SS component
93	Bpet4261	4521776..4522723 [-], 948	conserved hypothetical protein	Tfc23, T4SS component
94	Bpet4262	4522720..4523166 [-], 447	putative secreted protein	Tfc24, T4SS component
95	radC5	4523331..4523825 [-], 495	DNA repair protein radC homolog
96	Bpet4264	4524004..4524741 [-], 738	putative secreted protein
97	Bpet4265	4524784..4527693 [-], 2910	conserved hypothetical protein	Tfc16, T4SS component
98	Bpet4266	4527693..4528142 [-], 450	putative lipoprotein	Tfc15, T4SS component
99	Bpet4267	4528123..4529532 [-], 1410	putative exported protein	Tfc14, T4SS component
100	Bpet4268	4529522..4530460 [-], 939	putative secreted protein	Tfc13, T4SS component
101	Bpet4269	4530457..4531149 [-], 693	conserved hypothetical protein	Tfc12, T4SS component
102	Bpet4270	4531146..4531556 [-], 411	conserved hypothetical protein	Tfc11, T4SS component
103	Bpet4271	4531570..4531929 [-], 360	putative membrane protein	Tfc10, T4SS component
104	Bpet4272	4531946..4532179 [-], 234	putative membrane protein
105	Bpet4273	4532176..4532559 [-], 384	putative membrane protein	Tfc9, T4SS component
106	Bpet4274	4532658..4533419 [-], 762	putative membrane protein	Tfc8, T4SS component
107	Bpet4275	4533416..4535143 [-], 1728	hypothetical protein	Tfc6, T4SS component
108	Bpet4276	4534929..4535600 [-], 672	hypothetical protein	Tfc6, T4SS component
109	Bpet4277	4535605..4536153 [-], 549	conserved exported protein	Tfc5, T4SS component
110	Bpet4278	4536150..4536755 [-], 606	conserved exported protein	Tfc4, T4SS component
111	Bpet4279	4536737..4537474 [-], 738	conserved protein, putatively exported	Tfc3, T4SS component
112	Bpet4280	4537489..4538130 [-], 642	putative membrane protein	Tfc2, T4SS component
113	Bpet4281	4538127..4538705 [-], 579	putative lipoprotein	Tfc2, T4SS component
114	Bpet4282	4538848..4540500 [-], 1653	hypothetical protein predicted by Glimmer/Critica
115	Bpet4283	4540566..4542368 [-], 1803	conserved hypothetical protein
116	Bpet4284	4542541..4544475 [-], 1935	conserved plasmid related protein
117	ltrA1	4544616..4546436 [-], 1821	Mobile mitochondrial group II intron of COX1 which is involved in pre-mRNA splicing and in deletion of introns from mitochondrial DNA
118	Bpet4286	4547019..4547357 [-], 339	plasmid-related protein
119	Bpet4287	4547493..4547798 [-], 306	hypothetical protein predicted by Glimmer/Critica
120	Bpet4288	4547868..4548179 [-], 312	hypothetical protein
121	Bpet4289	4548282..4549307 [-], 1026	hypothetical protein predicted by Glimmer/Critica
122	Bpet4290	4549438..4551153 [-], 1716	reverse transcriptase
123	tnp25	4551433..4551720 [+], 288	transposase
124	Bpet4292	4551717..4552607 [+], 891	probable transposase	Integrase
125	Bpet4293	4553166..4553816 [-], 651	hypothetical protein
126	Bpet4294	4554103..4555821 [-], 1719	reverse transcriptase
127	Bpet4295	4556423..4556722 [-], 300	conserved hypothetical protein
128	Bpet4296	4556817..4557515 [-], 699	conserved hypothetical protein
129	Bpet4297	4557611..4558438 [-], 828	Hypothetical protein (o273)
130	Bpet4298	4558589..4559503 [-], 915	hypothetical protein
131	Bpet4299	4559882..4560694 [-], 813	conserved hypothetical protein
132	Bpet4300	4560975..4561253 [-], 279	hypothetical protein predicted by Glimmer/Critica
133	Bpet4301	4561348..4562085 [-], 738	conserved hypothetical protein
134	Bpet4302	4562298..4562690 [-], 393	conserved hypothetical protein
135	Bpet4303	4562712..4562924 [-], 213	hypothetical protein
136	Bpet4304	4563253..4563498 [-], 246	conserved hypothetical protein
137	topB4	4564022..4566034 [-], 2013	DNA topoisomerase III
138	ssb6	4566304..4566744 [-], 441	-
139	Bpet4307	4566818..4567345 [-], 528	conserved hypothetical protein
140	Bpet4308	4567342..4568142 [-], 801	conserved hypothetical protein
141	Bpet4309	4568460..4569704 [-], 1245	conserved hypothetical protein
142	Bpet4310	4569708..4570268 [-], 561	conserved hypothetical protein
143	Bpet4311	4570284..4571876 [-], 1593	conserved hypothetical protein
144	Bpet4312	4571869..4572117 [-], 249	conserved hypothetical protein
145	parA5	4572101..4572976 [-], 876	chromosome partitioning protein
146	alpA2	4573019..4573231 [-], 213	-
147	Bpet4315	4573350..4574105 [-], 756	conserved hypothetical protein
148	intB13	4574670..4576598 [-], 1929	phage-related integrase
149	bug92	4577051..4578043 [-], 993	putative secreted protein
150	Bpet4318	4578108..4579058 [-], 951	hydroxymethylglutaryl-CoA lyase
151	Bpet4319	4579055..4580248 [-], 1194	-
152	Bpet4320	4580366..4581265 [-], 900	transcriptional regulator, LysR-family

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	143	Fasta

(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 0.472916667. [PubMed:19615092]

experimental literature