ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	221
Name	ICE-GI3
ICEO ID	ICEO_0000104
Organism	Bordetella petrii DSM 12804
Size (bp)	102111
GC content [Genome] (%)	63.02[65.48]
Insertion site	tRNA-Gly (tRNA-11)
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AM902716 (complete ICE sequence in this genome)
Replicon	chromosome (5287950 bp, BioProject:28135) [NC_010170]
Genome coordinates	1493541..1595651
Putative oriT region	-
Putative relaxase	coordinates: 1557786..1559633; Locus tag: Bpet1509; Family: MOB_H

II. ICE interaction with IME/CIME/

The interaction information of ICE-GI3 is not available.

The graph information of ICE-GI3 components from AM902716

Complete gene list of ICE-GI3 from AM902716
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	Bpet1435	1489427..1490008 [+], 582	transcriptional regulator, TetR-family
2	Bpet1436	1490093..1491262 [+], 1170	putative Transmembrane efflux protein of the MFS type
3	intB13	1491479..1493314 [-], 1836	phage-related integrase
4	Bpet1438	1494345..1495100 [+], 756	conserved hypothetical protein
5	alpA3	1495220..1495432 [+], 213	predicted transcriptional regulator (phage-related)
6	parA3	1495476..1496351 [+], 876	hypothetical protein
7	Bpet1441	1496335..1496592 [+], 258	conserved hypothetical protein
8	Bpet1442	1496585..1498237 [+], 1653	conserved hypothetical protein
9	Bpet1443	1498253..1498813 [+], 561	conserved hypothetical protein
10	Bpet1444	1498817..1500061 [+], 1245	conserved hypothetical protein
11	Bpet1445	1500392..1501171 [+], 780	conserved hypothetical protein
12	Bpet1446	1501168..1501695 [+], 528	conserved hypothetical protein
13	ssb3	1501769..1502209 [+], 441	-
14	topB3	1502488..1504500 [+], 2013	DNA topoisomerase III
15	Bpet1449	1505037..1505642 [+], 606	putative DNA-cytosine methyltransferase
16	Bpet1450	1505848..1506987 [+], 1140	integrase/recombinase
17	Bpet1451	1506987..1507982 [+], 996	integrase/recombinase
18	Bpet1452	1508109..1508999 [-], 891	probable transposase
19	tnp8	1508996..1509283 [-], 288	transposase
20	int1	1509356..1510309 [+], 954	putative integrase/recombinase	Integrase
21	Bpet1455	1510428..1511417 [+], 990	DNA-cytosine methyltransferase
22	Bpet1456	1511662..1512219 [+], 558	conserved hypothetical protein
23	Bpet1457	1512376..1512762 [+], 387	conserved hypothetical protein
24	Bpet1458	1512784..1513176 [+], 393	conserved hypothetical protein
25	Bpet1459	1513349..1514035 [+], 687	conserved hypothetical protein
26	Bpet1460	1514115..1514852 [+], 738	conserved hypothetical protein
27	Bpet1461	1514950..1515228 [+], 279	conserved hypothetical protein
28	Bpet1462	1515302..1516243 [+], 942	conserved hypothetical protein
29	Bpet1463	1516254..1517144 [-], 891	probable transposase
30	tnp9	1517141..1517428 [-], 288	transposase
31	Bpet1465	1517756..1518109 [+], 354	conserved hypothetical protein
32	Bpet1466	1518255..1519097 [+], 843	conserved hypothetical protein
33	Bpet1467	1519151..1519294 [-], 144	Potential Pseudomonas putida clc transposon
34	Bpet1468	1519875..1520792 [+], 918	hypothetical protein
35	Bpet1469	1520850..1521539 [+], 690	conserved hypothetical protein
36	Bpet1470	1521635..1521967 [+], 333	conserved hypothetical protein
37	Bpet1471	1522064..1522471 [+], 408	-
38	Bpet1472	1522488..1522748 [+], 261	hypothetical protein predicted by Glimmer/Critica
39	Bpet1473	1522825..1523475 [+], 651	conserved hypothetical protein
40	Bpet1474	1523540..1524649 [+], 1110	conserved hypothetical protein
41	ltrA2	1525670..1527490 [+], 1821	Mobile mitochondrial group II intron of COX1 which is involved in pre-mRNA splicing and in deletion of introns from mitochondrial DNA
42	Bpet1476	1527718..1529565 [+], 1848	conserved plasmid related protein
43	Bpet1477	1529679..1530548 [+], 870	hypothetical protein predicted by Glimmer/Critica
44	Bpet1478	1530709..1531308 [+], 600	putative secreted protein	Tfc2, T4SS component
45	Bpet1479	1531305..1531955 [+], 651	putative membrane protein	Tfc2, T4SS component
46	Bpet1480	1531970..1532689 [+], 720	conserved protein, putatively exported	Tfc3, T4SS component
47	Bpet1481	1532671..1533261 [+], 591	conserved exported protein	Tfc4, T4SS component
48	Bpet1482	1533258..1533806 [+], 549	conserved hypothetical protein	Tfc5, T4SS component
49	Bpet1483	1533811..1535997 [+], 2187	putative plasmid-transfer-protein	Tfc6, T4SS component
50	Bpet1484	1535994..1536743 [+], 750	putative Membrane protein	Tfc8, T4SS component
51	Bpet1485	1536780..1537184 [-], 405	conserved hypothetical protein
52	Bpet1486	1537370..1537753 [+], 384	putative membrane protein	Tfc9, T4SS component
53	Bpet1487	1537750..1537983 [+], 234	conserved hypothetical protein
54	Bpet1488	1537994..1538359 [+], 366	conserved hypothetical protein	Tfc10, T4SS component
55	Bpet1489	1538372..1538782 [+], 411	putative membrane protein	Tfc11, T4SS component
56	Bpet1490	1538779..1539471 [+], 693	conserved hypothetical protein	Tfc12, T4SS component
57	Bpet1491	1539468..1540400 [+], 933	putative secreted protein	Tfc13, T4SS component
58	Bpet1492	1540390..1541808 [+], 1419	putative exported protein	Tfc14, T4SS component
59	Bpet1493	1541789..1542229 [+], 441	putative lipoprotein	Tfc15, T4SS component
60	bp050705_PS_02	1542229..1546381 [+], 4153	-
61	Bpetpseudo_04	1542229..1543317 [+], 1089	pseudogene	Tfc16, T4SS component
62	tnp10	1543350..1543637 [+], 288	transposase
63	Bpet1495	1543634..1544524 [+], 891	probable transposase
64	Bpetpseudo_05	1544570..1546381 [+], 1812	pseudogene	Tfc16, T4SS component
65	Bpet1496	1546395..1547159 [+], 765	putative protein-disulfide isomerase
66	Bpet1497	1547343..1547789 [+], 447	putative DNA repair protein RadC
67	Bpet1498	1547845..1549104 [+], 1260	putative integrase/recombinase
68	Bpet1499	1549101..1550093 [+], 993	putative integrase/recombinase
69	Bpet1500	1550090..1551100 [+], 1011	putative integrase/recombinase
70	Bpet1501	1551600..1552046 [+], 447	conserved hypothetical protein	Tfc24, T4SS component
71	Bpet1502	1551923..1552990 [+], 1068	conserved hypothetical protein	Tfc23, T4SS component
72	Bpet1503	1553000..1554397 [+], 1398	conserved hypothetical protein	Tfc22, T4SS component
73	Bpet1504	1554394..1554753 [+], 360	hypothetical protein predicted by Glimmer/Critica
74	Bpet1505	1554769..1556286 [+], 1518	conserved hypothetical protein	Tfc19, T4SS component
75	Bpet1506	1556300..1556677 [-], 378	putative transposon
76	Bpet1507	1556705..1557163 [-], 459	conserved hypothetical protein
77	Bpet1508	1557163..1557480 [-], 318	probable suppressor protein
78	Bpet1509	1557786..1559633 [+], 1848	putative helicase	Relaxase, MOB_H Family
79	Bpet1510	1559933..1560112 [-], 180	putative transposon
80	Bpet1511	1560148..1560621 [-], 474	putative transcriptional regulator
81	Bpet1512	1560803..1561570 [-], 768	similar to glucose 1-dehydrogenase
82	Bpet1513	1561652..1562170 [-], 519	Biphenyl dioxygenase small subunit
83	Bpetpseudo_06	1562213..1562752 [-], 540	pseudogene
84	Bpet1514	1562792..1564339 [-], 1548	putative transposase
85	Bpet1515	1564448..1565650 [-], 1203	probable dihydrolipoamide dehydrogenase
86	Bpet1516	1565629..1566108 [-], 480	Putative acyl-CoA thioester hydrolase
87	Bpet1517	1566127..1567602 [-], 1476	probable glutathione reductase
88	Bpet1518	1567491..1568060 [-], 570	probable glutathione S-transferase
89	gst2	1568129..1568749 [-], 621	putative glutathione transferase
90	Bpet1520	1568763..1569353 [-], 591	putative enzyme
91	Bpet1521	1569368..1569670 [-], 303	hypothetical protein predicted by Glimmer/Critica
92	Bpet1522	1569683..1569988 [-], 306	conserved hypothetical protein
93	Bpet1523	1570186..1572237 [-], 2052	transposition-related fusion-protein
94	Bpet1524	1572677..1573705 [-], 1029	glycosyltransferase
95	Bpet1525	1573702..1574760 [-], 1059	glycosyltransferase
96	Bpet1526	1574753..1575355 [-], 603	acetyltransferase
97	Bpet1527	1575339..1576721 [-], 1383	conserved hypothetical protein
98	Bpet1528	1576782..1577165 [-], 384	putative transposase
99	Bpet1529	1577568..1579115 [-], 1548	putative transposase
100	Bpet1530	1579174..1579845 [+], 672	ISSod11, transposase
101	Bpet1531	1580078..1580320 [+], 243	conserved hypothetical protein
102	Bpet1532	1580338..1580688 [+], 351	conserved hypothetical protein
103	clcR	1580832..1581716 [-], 885	transcriptional regulator clcR
104	clcA	1581886..1582668 [+], 783	catechol 1,2-dioxygenase
105	catB2	1582665..1583777 [+], 1113	muconate cycloisomerase I
106	bug36	1583804..1584787 [+], 984	putative secreted protein
107	Bpet1537	1584809..1585519 [+], 711	probable carboxymethylenebutenolidase
108	Bpet1538	1585516..1586574 [+], 1059	maleylacetate reductase
109	Bpet1539	1586690..1587673 [+], 984	transcriptional regulator, AraC family
110	Bpet1540	1588469..1589731 [+], 1263	probable Ring hydroxylating alpha subunit
111	Bpet1541	1589734..1590213 [+], 480	conserved hypothetical protein
112	Bpet1542	1590311..1591288 [+], 978	Vanillate O-demethylase oxidoreductase
113	Bpet1543	1591493..1592878 [+], 1386	benzoate transport protein, putative
114	Bpet1544	1592784..1593284 [+], 501	hypothetical protein predicted by Glimmer/Critica
115	intB13	1593493..1595466 [-], 1974	phage-related integrase
116	murB	1595859..1596920 [+], 1062	UDP-N-acetylmuramate dehydrogenase
117	dapB	1596967..1597758 [-], 792	-
118	omlA	1597819..1598547 [-], 729	outer membrane lipoprotein OmlA
119	fur	1598708..1599130 [+], 423	ferric uptake regulation protein

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	111	Fasta

(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 0.472916667. [PubMed:19615092]

experimental literature