ICEberg
I. Information of ICE
ICEberg ID220
Name ICE-GI2 This ICE is derived from experimental literature
ICEO ID ICEO_0000103
OrganismBordetella petrii DSM 12804
Size (bp)143430
GC content [Genome] (%)60.59[65.48]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, BioProject:28135) [NC_010170]
Genome coordinates1350129..1493558 
Putative oriT region -
Putative relaxase coordinates: 1442143..1443972; Locus tag: Bpet1382;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICE-GI2 is not available.



The graph information of ICE-GI2 components from AM902716
Complete gene list of ICE-GI2 from AM902716
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1Bpet12831345519..1347024 [+], 1506putative long-chain-fatty-acid--CoA ligase
2Bpet12841347021..1347806 [+], 786putative Citrate synthase
3Bpet12851347809..1348561 [+], 753putative oxidoreductase
4Bpet12861348522..1349400 [+], 879probable short chain dehydrogenase
5Bpet12871349423..1350037 [-], 615-
6Bpet12881350756..1351655 [+], 900transcriptional regulator, LysR-family
7Bpet12891352135..1352347 [+], 213putative transcriptional regulator (phage-related)
8parA21352385..1353248 [+], 864conserved hypothetical protein
9ig_06091353232..1353489 [+], 258conserved hypothetical protein
10Bpet12911353482..1355206 [+], 1725conserved hypothetical protein
11Bpet12921355218..1355778 [+], 561conserved hypothetical protein
12Bpet12931355781..1356971 [+], 1191hypothetical protein
13Bpet12941357574..1358395 [+], 822conserved hypothetical protein
14Bpet12951358392..1358922 [+], 531probable transcriptional regulator
15Bpet12961358919..1359878 [+], 960adenine DNA methyltransferase protein
16ssb21359923..1360366 [+], 444-
17top3A1360772..1361959 [+], 1188pseudogene
18tnp51362023..1362310 [+], 288transposase
19Bpet13001362307..1363197 [+], 891probable transposase
20top3B1363278..1364081 [+], 804pseudogene
21Bpet13021364635..1365204 [+], 570putative C-5 cytosine-specific DNA methylase
22Bpet13031365410..1366549 [+], 1140integrase/recombinase
23Bpet13041366549..1367544 [+], 996integrase/recombinase
24Bpet13051367537..1368586 [+], 1050putative integrase/recombinaseIntegrase 
25Bpet13061368705..1369904 [+], 1200DNA-cytosine methyltransferase
26Bpet13071370007..1370522 [-], 516probable acetyltransferase
27Bpet13081370522..1370800 [-], 279conserved hypothetical protein
28Bpet13091371604..1372317 [+], 714hypothetical protein predicted by Glimmer/Critica
29Bpet13101372475..1373446 [+], 972hypothetical protein predicted by Glimmer/Critica
30Bpet13111373700..1374512 [+], 813conserved hypothetical protein
31Bpet13121374834..1375199 [+], 366conserved hypothetical protein
32Bpet13131375305..1375646 [+], 342conserved plasmid protein
33Bpet13141376054..1376602 [+], 549hypothetical protein
34Bpet13151376709..1377317 [+], 609hypothetical protein
35Bpet13161377395..1377736 [+], 342hypothetical protein predicted by Glimmer/Critica
36Bpet13171377971..1378798 [+], 828Hypothetical protein (o273)
37Bpet13181378936..1379586 [+], 651conserved hypothetical protein
38Bpet13191379652..1380758 [+], 1107hypothetical protein predicted by Glimmer/Critica
39Bpet13201380838..1381164 [+], 327hypothetical protein predicted by Glimmer/Critica
40Bpet13211381254..1381559 [+], 306hypothetical protein predicted by Glimmer/Critica
41Bpet13221381685..1381996 [+], 312hypothetical protein
42Bpet13231382099..1384372 [+], 2274conserved plasmid related protein
43Bpet13241384388..1385263 [-], 876putative DNA-binding protein
44Bpet13251385419..1386660 [+], 12425-aminolevulinic acid synthase
45Bpet13261386661..1387161 [+], 501probable acetyltransferase
46Bpet13271387158..1388225 [+], 1068putative oxidoreductase
47asnB1388255..1390108 [+], 1854asparagine synthetase, glutamine-hydrolyzing
48Bpet13291390130..1391332 [+], 1203MFS transporter
49Bpet13301392232..1393371 [+], 1140putative monooxygenase
50Bpet13311393394..1395133 [+], 17402,4-dichlorophenol 6-monooxygenase
51Bpet13321395199..1395825 [+], 627transcriptional regulator, TetR-family
52Bpet13331395907..1397118 [+], 1212permease of the major facilitator family
53Bpet13341397137..1397862 [+], 726hypothetical Protein
54Bpet13351397873..1398595 [-], 723conserved hypothetical protein
55Bpet13361398784..1399206 [-], 423conserved hypothetical protein, fragment
56tnp61399285..1399572 [+], 288transposase
57Bpet13381399569..1400459 [+], 891probable transposase
58Bpet13391400498..1400833 [-], 336hypothetical protein predicted by Glimmer/Critica
59Bpet13401400898..1401554 [-], 657Threonine efflux protein.
60Bpet13411401556..1402326 [-], 771conserved hypothetical protein
61alaS11402426..1403058 [-], 633alanyl-tRNA synthetase domain protein
62Bpet13431403154..1404140 [+], 987transcriptional regulator, LysR-family
63Bpet13441404231..1404815 [+], 585putative lipoproteinTfc2, T4SS component 
64Bpet13451404812..1405459 [+], 648putative membrane proteinTfc2, T4SS component 
65Bpet13461405469..1406209 [+], 741conserved protein, putatively exportedTfc3, T4SS component 
66Bpet13471406194..1406778 [+], 585conserved exported proteinTfc4, T4SS component 
67Bpet13481406775..1407326 [+], 552putative secreted proteinTfc5, T4SS component 
68Bpet13491407337..1409505 [+], 2169conserved hypothetical proteinTfc6, T4SS component 
69Bpet13501409502..1410251 [+], 750putative membrane proteinTfc8, T4SS component 
70csrA1410532..1410729 [+], 198carbon storage regulator
71Bpet13521410780..1412069 [-], 1290conserved hypothetical protein
72Bpet13531412066..1412434 [-], 369putative DNA-binding protein
73Bpet13541412789..1413145 [+], 357putative secreted proteinTfc9, T4SS component 
74Bpet13551413142..1413375 [+], 234-
75Bpet13561413392..1413757 [+], 366conserved hypothetical proteinTfc10, T4SS component 
76Bpet13571413767..1414168 [+], 402putative membrane proteinTfc11, T4SS component 
77Bpet13581414165..1414857 [+], 693conserved hypothetical proteinTfc12, T4SS component 
78Bpet13591414854..1415762 [+], 909conserved hypothetical proteinTfc13, T4SS component 
79Bpet13601415752..1417200 [+], 1449putative exported proteinTfc14, T4SS component 
80Bpet13611417181..1417615 [+], 435putative lipoproteinTfc15, T4SS component 
81Bpet13621417615..1420494 [+], 2880conserved hypothetical proteinTfc16, T4SS component 
82Bpet13631420550..1422661 [-], 2112probable signalling protein
83Bpet13641423188..1423943 [+], 756conserved hypothetical protein
84Bpet13651423971..1424603 [-], 633conserved hypothetical protein
85Bpet13661425030..1426340 [-], 1311conserved hypothetical protein
86Bpet13671426282..1427076 [-], 795transcriptional regulator, TetR-family
87Bpet13681427315..1429882 [-], 2568probable signalling protein
88Bpet13691430684..1432189 [+], 1506-
89Bpet13701432239..1433117 [-], 879transcriptional regulator, LysR-family
90Bpet13711433241..1434017 [+], 777hypothetical protein
91rhtB21434074..1434691 [+], 618putative amino acid efflux transmembrane protein
92Bpet13731434704..1435333 [+], 630-
93Bpet13741435548..1435997 [+], 450conserved hypothetical proteinTfc24, T4SS component 
94Bpet13751435994..1436938 [+], 945conserved hypothetical proteinTfc23, T4SS component 
95Bpet13761436940..1438346 [+], 1407conserved hypothetical proteinTfc22, T4SS component 
96Bpet13771438343..1438693 [+], 351conserved hypothetical protein
97Bpet13781438707..1440224 [+], 1518conserved hypothetical proteinTfc19, T4SS component 
98Bpet13791440233..1440610 [-], 378hypothetical protein
99Bpet13801440673..1441341 [-], 669conserved hypothetical protein
100Bpet13811441406..1441654 [-], 249hypothetical protein predicted by Glimmer/Critica
101Bpet13821442143..1443972 [+], 1830putative helicaseRelaxase, MOBH Family
102Bpet13831444018..1445601 [-], 1584conserved hypothetical protein
103Bpet13841445598..1446872 [-], 1275conserved hypothetical protein
104benE1446869..1448050 [-], 1182benzoate membrane transport protein
105Bpet13861448078..1449436 [-], 1359putative n-hydroxybenzoate transporter
106areB1449517..1450647 [-], 1131Aryl-alcohol dehydrogenase
107Bpet13881450658..1452124 [-], 1467benzaldehyde dehydrogenase II
108Bpet13891452184..1452570 [-], 387Hypothetical UPF0065 protein in clcB-clcD intergenic region precursor.
109Bpet13901452695..1452973 [-], 279methylmuconolactone isomerase
110Bpet13911453007..1453819 [-], 8133-oxoadipate enol-lactone hydrolase
111Bpet13921453830..1454108 [-], 279putative thiolase, fragment
112Bpet13931454092..1454286 [-], 1953-oxoadipate CoA-transferase subunit A, fragment
113benK1454310..1455671 [-], 1362benzoate transport protein, putative
114Bpet13951455709..1456125 [-], 417conserved hypothetical protein
115benD1456182..1456955 [-], 774cis-1,2-dihydroxycyclohexa-3, 5-diene-1-carboxylate dehydrogenase,(cis-1,2-dihydroxy-3, 4-cyclohexadiene-1-carboxylate dehydrogenase)
116benC1456968..1457993 [-], 1026Ferredoxin--NAD(+) reductase
117benB1458011..1458511 [-], 501benzoate 1,2-dioxygenase
118benA1458508..1459872 [-], 1365Benzoate 1,2-dioxygenase alpha subunit
119catA21459999..1460934 [-], 936catechol 1,2-dioxygenase
120catB11460977..1462197 [-], 1221chloromuconate cycloisomerase
121catR11462273..1463271 [+], 999transcriptional regulator catR
122Bpet14031463665..1464102 [+], 438putative transposase
123Bpet14041464072..1464458 [+], 387transposase IS4 family
124Bpet14051464541..1464735 [-], 195putative transposase A
125Bpet14061464809..1465105 [-], 297putative transposase
126Bpet14071465132..1465323 [+], 192conserved hypothetical protein
127Bpet14081465555..1466010 [+], 456conserved hypothetical protein
128Bpet14091466321..1468411 [+], 2091transposase
129Bpet14101468264..1469049 [-], 786integrase, catalytic domain
130Bpet14111469103..1469429 [-], 327transposase IS911 HTH and LZ region
131Bpet14121469516..1470343 [-], 828hypothetical protein
132Bpet14131470523..1470714 [-], 192conserved hypothetical protein
133Bpet14141470755..1471189 [-], 435conserved hypothetical protein
134nthB1471192..1471848 [-], 657nitrile hydratase subunit beta (Nitrilase) (NHase)
135nthA1471859..1472620 [-], 762nitrile hydratase alpha subunit
136Bpet14171472754..1474160 [-], 1407glutamyl-tRNA(Gln) amidotransferase subunit A
137Bpet14181474157..1474363 [-], 207hypothetical protein predicted by Glimmer/Critica
138Bpet14191474894..1475280 [+], 387transposase IS4 family
139Bpet14201475915..1477492 [-], 1578-
140Bpet14211478386..1478928 [+], 543hypothetical protein predicted by Glimmer/Critica
141Bpet14221479015..1479320 [+], 306hypothetical protein predicted by Glimmer/Critica
142Bpet14231479382..1479675 [-], 294hypothetical protein predicted by Glimmer/Critica
143Bpet14241480368..1480523 [+], 156IS5 family element, transposase orfA
144Bpet14251480737..1481072 [+], 3363-oxoacid CoA-transferase subunit A, fragment
145Bpet14261481151..1481471 [+], 3213-oxoacid CoA-transferase subunit B, fragment
146Bpet14271481766..1482545 [+], 780transcriptional regulatory protein
147Bpet14281482530..1483702 [-], 1173putative salicylate hydroxylase
148Bpet14291483719..1484573 [-], 8552-hydroxyhepta-2,4-diene-1,7-dioate isomerase
149Bpet14301484603..1485646 [-], 1044putative gentisate 1,2-dioxygenase
150Bpet14311485814..1487190 [+], 1377putative 4-hydroxybenzoate transporter
151tnp71487225..1487650 [-], 426putative resolvase
152Bpet14331488052..1488378 [-], 327putative transcriptional regulator
153Bpet14341488485..1489135 [+], 651probable transcriptional regulator
154Bpet14351489427..1490008 [+], 582transcriptional regulator, TetR-family
155Bpet14361490093..1491262 [+], 1170putative Transmembrane efflux protein of the MFS type
156intB131491479..1493314 [-], 1836phage-related integrase
157Bpet14381494345..1495100 [+], 756conserved hypothetical protein
158alpA31495220..1495432 [+], 213predicted transcriptional regulator (phage-related)
159parA31495476..1496351 [+], 876hypothetical protein
160Bpet14411496335..1496592 [+], 258conserved hypothetical protein
161Bpet14421496585..1498237 [+], 1653conserved hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins151Fasta
(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 0.472916667. [PubMed:19615092] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU