ICEberg
I. Information of ICE
ICEberg ID203
Name ICE(Tn4371)6067 This is a predicted ICE derived from literature
OrganismDelftia acidovorans SPH-1
Size (bp)66755
GC content [Genome] (%)63.18[66.48]
Insertion siteTTTTTCAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000884 (complete ICE sequence in this genome)
Replicon chromosome (6767514 bp, BioProject:17413) [NC_010002]
Genome coordinates2949925..3016679 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6067 is not available.



The graph information of ICE(Tn4371)6067 components from CP000884
Complete gene list of ICE(Tn4371)6067 from CP000884
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1Daci_26762945745..2946584 [-], 840phosphonate ABC transporter, ATPase subunit
2Daci_26772946783..2947643 [+], 861transcriptional regulator, LysR family
3Daci_26782947751..2948218 [+], 468conserved hypothetical protein
4Daci_26792948215..2951187 [-], 2973transposase Tn3 family protein
5Daci_26802951190..2951747 [-], 558Resolvase domain
6Daci_26812951878..2953353 [-], 1476RND efflux system, outer membrane lipoprotein, NodT family
7Daci_26822953340..2953813 [-], 474conserved hypothetical protein
8Daci_26832953842..2954552 [-], 711ABC transporter related
9Daci_26842954554..2955759 [-], 1206protein of unknown function DUF214
10Daci_26852955756..2956907 [-], 1152efflux transporter, RND family, MFP subunit
11Daci_26862956904..2957512 [-], 609transcriptional regulator, TetR family
12Daci_26872957910..2958164 [+], 255SCO1/SenC family protein
13Daci_26882958191..2958670 [+], 480protein of unknown function DUF461
14Daci_26892958787..2959062 [-], 276conserved hypothetical protein
15Daci_26902959059..2960327 [-], 1269conjugation TrbI family proteinTrbI, T4SS component 
16Daci_26912960330..2961331 [-], 1002P-type conjugative transfer protein TrbGTrbG, T4SS component 
17Daci_26922961328..2962032 [-], 705Conjugal transfer proteinTrbF, T4SS component 
18Daci_26932962051..2963403 [-], 1353P-type conjugative transfer protein TrbLTrbL, T4SS component 
19Daci_26942963400..2963726 [-], 327putative lipoproteinTrbJ, T4SS component 
20Daci_26952963738..2964493 [-], 756P-type conjugative transfer protein TrbJTrbJ, T4SS component 
21Daci_26962964490..2966961 [-], 2472AAA ATPaseTrbE, T4SS component 
22Daci_26972966976..2967248 [-], 273putative conjugal transfer TrbD transmembrane proteinTrbD, T4SS component 
23Daci_26982967245..2967622 [-], 378Conjugal transfer protein TrbCTrbC, T4SS component 
24Daci_26992967619..2968653 [-], 1035P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
25Daci_27002968650..2969114 [-], 465CopG domain protein DNA-binding domain protein
26Daci_27012969111..2971120 [-], 2010TRAG family proteinVirD4, T4SS component 
27Daci_27022971337..2971492 [-], 156putative lipoprotein
28Daci_27032971590..2972504 [-], 915transcriptional regulator, LysR family
29Daci_27042972547..2972969 [-], 423diacylglycerol kinase
30Daci_27052972981..2974654 [-], 1674sulfatase
31Daci_27062974651..2975433 [-], 783conserved hypothetical protein
32Daci_27072975420..2976667 [-], 1248outer membrane efflux protein
33Daci_27082976715..2977035 [-], 321conserved hypothetical protein
34Daci_27092977032..2980127 [-], 3096heavy metal efflux pump, CzcA family
35Daci_27102980141..2981364 [-], 1224efflux transporter, RND family, MFP subunit
36Daci_27112981675..2982226 [+], 552cytochrome B561
37Daci_27122982268..2982975 [+], 708protein of unknown function DUF125 transmembrane
38Daci_27132982989..2984401 [-], 1413histidine kinase
39Daci_27142984405..2985070 [-], 666two component transcriptional regulator, winged helix family
40Daci_27152985085..2986428 [-], 1344Ferric reductase domain protein transmembrane component domain
41Daci_27162986644..2989025 [-], 2382conserved hypothetical proteinRelaxase, MOBL Family
42Daci_27172989087..2989674 [-], 588putative conjugal transfer TRAF transmembrane proteinTraF, T4SS component 
43Daci_27182989671..2990195 [-], 525conserved hypothetical protein
44Daci_27192990192..2990455 [-], 264conserved hypothetical protein
45Daci_27202990452..2991090 [-], 639Cobyrinic acid ac-diamide synthase
46Daci_27212991344..2992201 [-], 858conserved hypothetical replication initiator and transcription repressor protein
47Daci_27222992228..2992524 [-], 297conserved hypothetical protein
48Daci_27232992818..2993123 [+], 306conserved hypothetical protein
49Daci_27242993131..2994531 [+], 1401integrase family protein
50Daci_27252994541..2997150 [+], 2610integrase family protein
51Daci_27262997147..2997827 [+], 681alpha/beta hydrolase fold
52Daci_27272997973..2998737 [-], 765conserved hypothetical protein
53Daci_27282999079..2999426 [-], 348putative lipoprotein
54Daci_27292999650..2999943 [+], 294helix-turn-helix domain protein
55Daci_27303000297..3000611 [-], 315protein of unknown function DUF736TraF, T4SS component 
56Daci_27313001433..3001951 [+], 519GCN5-related N-acetyltransferase
57Daci_27323002082..3002357 [-], 276hypothetical protein
58Daci_27333002354..3004420 [-], 2067ParB domain protein nuclease
59Daci_27343004496..3005323 [-], 828protein of unknown function DUF932
60Daci_27353005848..3006111 [+], 264hypothetical protein
61Daci_27363006259..3006558 [+], 300conserved hypothetical protein
62Daci_27373006701..3006979 [-], 279conserved hypothetical protein
63Daci_27383007043..3007393 [-], 351conserved hypothetical protein
64Daci_27393007770..3008885 [-], 1116hypothetical protein
65Daci_27403008886..3011141 [-], 2256UBA/THIF-type NAD/FAD binding protein
66Daci_27413011138..3012331 [-], 1194conserved hypothetical protein
67Daci_27423012421..3013323 [+], 903conserved hypothetical protein
68Daci_27433013330..3014118 [+], 789conserved hypothetical protein
69Daci_27443014164..3015300 [-], 1137protein of unknown function DUF1016
70Daci_27453015297..3016544 [-], 1248integrase family proteinIntegrase 
71Daci_27463016730..3017338 [-], 609conserved hypothetical protein
72Daci_27473017570..3019570 [+], 2001acetate--CoA ligase
73Daci_27483019746..3020228 [+], 483conserved hypothetical protein
74Daci_27493020330..3020638 [-], 309cytochrome c class I
75Daci_27503020742..3020984 [+], 243conserved hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins9Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PubMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU