ICEberg
I. Information of ICE
ICEberg ID201
Name ICE(Tn4371)6042 This is a predicted ICE derived from literature
OrganismPseudomonas aeruginosa PA7
Size (bp)55287
GC content [Genome] (%)63.39[66.45]
Insertion siteTTTTTTGT
FunctionStreptomycin, bleomycin and aminoglycoside resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP000744 (complete ICE sequence in this genome)
Replicon chromosome (6588339 bp, BioProject:16720) [NC_009656]
Genome coordinates3829571..3884857 
Putative oriT region -
Putative relaxase coordinates: 3862164..3864137; Locus tag: PSPA7_3726;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6042 is not available.



The graph information of ICE(Tn4371)6042 components from CP000744
Complete gene list of ICE(Tn4371)6042 from CP000744
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1sdhB3824623..3825330 [-], 708succinate dehydrogenase (B subunit)
2sdhA3825342..3827114 [-], 1773succinate dehydrogenase, flavoprotein subunit
3sdhD3827118..3827492 [-], 375succinate dehydrogenase, hydrophobic membrane anchor protein
4sdhC3827480..3827866 [-], 387succinate dehydrogenase, cytochrome b556 subunit
5gltA3828215..3829501 [+], 1287citrate (Si)-synthase
6PSPA7_36953830088..3832118 [+], 2031putative helicase
7PSPA7_36963832400..3832624 [-], 225conjugal transfer protein
8PSPA7_36973832621..3833898 [-], 1278conjugation TrbI family proteinTrbI, T4SS component 
9PSPA7_36983833901..3834893 [-], 993conjugal transfer protein TrbG/VirB9/CagXTrbG, T4SS component 
10PSPA7_36993834890..3835594 [-], 705conjugal transfer proteinTrbF, T4SS component 
11trbL3835607..3836992 [-], 1386conjugal transfer protein TrbLTrbL, T4SS component 
12PSPA7_37013836989..3837309 [-], 321lipoprotein, putativeTrbJ, T4SS component 
13trbJ3837322..3838047 [-], 726P-type conjugative transfer protein TrbJTrbJ, T4SS component 
14PSPA7_37033838044..3840497 [-], 2454ATPaseTrbE, T4SS component 
15PSPA7_37043840513..3840785 [-], 273conjugal transfer proteinTrbD, T4SS component 
16PSPA7_37053840782..3841165 [-], 384conjugal transfer protein TrbCTrbC, T4SS component 
17trbB3841162..3842214 [-], 1053P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
18PSPA7_37073842211..3842675 [-], 465CopG domain protein DNA-binding domain protein
19PSPA7_37083842672..3844681 [-], 2010TraGVirD4, T4SS component 
20PSPA7_37093844916..3845179 [-], 264lipoprotein, putative
21PSPA7_37103845182..3846120 [-], 939transcriptional regulator, LysR family
22PSPA7_37113846633..3847340 [+], 708conserved hypothetical protein
23kdpA13847403..3849130 [+], 1728K+-transporting ATPase, A subunit
24kdpB13849143..3851167 [+], 2025K+-transporting ATPase, B subunit
25kdpC13851178..3851840 [+], 663K+-transporting ATPase, C subunit
26PSPA7_37153851837..3852130 [+], 294PTS system, nitrogen regulatory IIA component
27PSPA7_37163852111..3854855 [+], 2745sensor protein KdpD
28PSPA7_37173854836..3855570 [+], 735KDP operon transcriptional regulatory protein KdpE
29PSPA7_37183855983..3856195 [-], 213VirD2 components relaxase
30PSPA7_37193856321..3857121 [-], 801streptomycin 3''-kinase (Streptomycin 3''-phosphotransferase) (SPH)
31PSPA7_37203857160..3857540 [-], 381bleomycin resistance protein (BRP) (resistance protein)
32PSPA7_37213857561..3858355 [-], 795aminoglycoside 3'-phosphotransferase
33PSPA7_37223858698..3858976 [-], 279lipoprotein, putative
34PSPA7_37233858973..3859905 [-], 933transcriptional regulator, LysR family
35PSPA7_37243859909..3860727 [-], 819putative membrane protein
36PSPA7_37253861344..3862120 [+], 777DNA-binding protein
37PSPA7_37263862164..3864137 [-], 1974conserved hypothetical proteinRelaxase, MOBL Family
38PSPA7_37273864574..3865185 [-], 612conjugal transfer proteinTraF, T4SS component 
39PSPA7_37283865182..3865727 [-], 546hypothetical protein
40PSPA7_37293865724..3865837 [-], 114conserved hypothetical protein
41PSPA7_37303866005..3866643 [-], 639cobyrinic Acid a,c-diamide synthase
42PSPA7_37313866897..3867754 [-], 858replication protein A
43PSPA7_37323867769..3868053 [-], 285conserved hypothetical protein
44PSPA7_37333868165..3868935 [-], 771hypothetical protein
45PSPA7_37343868992..3869126 [-], 135hypothetical protein
46PSPA7_37353869281..3869631 [-], 351conserved hypothetical protein
47PSPA7_37373870008..3870244 [+], 237helix-turn-helix domain protein
48PSPA7_37363870241..3871686 [-], 1446transposaseIntegrase 
49PSPA7_37393872830..3872994 [+], 165hypothetical protein
50PSPA7_37383872991..3873305 [-], 315conserved hypothetical proteinTraF, T4SS component 
51PSPA7_37403874118..3876196 [-], 2079ParB domain protein nuclease
52PSPA7_37413876277..3877107 [-], 831protein YafZ
53PSPA7_37423878862..3880544 [+], 1683hypothetical protein
54PSPA7_37433881480..3882175 [+], 696transcriptional regulator, XRE family
55PSPA7_37443882475..3882648 [-], 174hypothetical protein
56PSPA7_37453882654..3882974 [-], 321transcriptional regulator, XRE family
57PSPA7_37463882971..3883336 [-], 366conserved hypothetical protein
58PSPA7_37473883476..3884675 [-], 1200integrase
59PSPA7_37483884895..3885566 [-], 672hypothetical protein
60PSPA7_37493885637..3886041 [-], 405Fe-S-cluster domain
61PSPA7_37503885996..3886694 [-], 699hypothetical protein
62PSPA7_37513886863..3887204 [+], 342hypothetical protein
63PSPA7_37523887211..3888077 [-], 867probable 3-hydroxyisobutyrate dehydrogenase
64PSPA7_37533888181..3888732 [+], 552hypothetical protein
65PSPA7_37543888827..3889108 [+], 282conserved hypothetical protein
66PSPA7_37553889223..3889822 [-], 600NADH:ubiquinone oxidoreductase, Na
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins53Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PubMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU