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I. Information of ICE

ICEberg ID	199
Name	ICE(Tn4371)6040
Organism	Bordetella petrii DSM 12804
Size (bp)	47191
GC content [Genome] (%)	63.74[65.48]
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	AM902716 (complete ICE sequence in this genome)
Replicon	chromosome (5287950 bp, BioProject:28135) [NC_010170]
Genome coordinates	2250540..2297731
Putative oriT region	-
Putative relaxase	coordinates: 2270521..2272515; Locus tag: Bpet2190;  Family:  MOBL

II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6040 is not available.

The graph information of ICE(Tn4371)6040 components from AM902716
Complete gene list of ICE(Tn4371)6040 from AM902716
#	Gene	Coordinates [+/-], size (bp)	Product  (GenBank annotation)	*Reannotation
1	folC	2245631..2246938 [+], 1308	Folylpoly-gamma-glutamate synthetase / Dihydrofolate synthase
2	Bpet2162	2246993..2247781 [+], 789	putative membrane protein
3	cvpA	2247778..2248266 [+], 489	colicin V production protein
4	purF	2248288..2249808 [+], 1521	amidophosphoribosyltransferase
5	dsbB	2249869..2250336 [+], 468	disulfide bond formation protein B
6	int2	2250722..2251930 [+], 1209	-	Integrase
7	Bpet2167	2251969..2252328 [+], 360	hypothetical protein
8	Bpet2168	2252332..2252652 [+], 321	putative DNA-binding protein
9	Bpet2169	2252687..2253667 [+], 981	hypothetical protein
10	Bpet2170	2253636..2253884 [+], 249	conserved hypothetical protein
11	Bpet2171	2253871..2255667 [+], 1797	conserved hypothetical protein
12	radC2	2256002..2256400 [+], 399	DNA repair protein radC homolog
13	Bpet2173	2256792..2257142 [+], 351	putative transposon
14	Bpet2174	2257204..2258130 [-], 927	hypothetical protein predicted by Glimmer/Critica
15	Bpet2175	2258841..2259671 [+], 831	conserved hypothetical protein
16	Bpet2176	2259737..2261800 [+], 2064	ParB-like nuclease
17	Bpet2177	2261863..2262072 [+], 210	conserved hypothetical protein
18	Bpet2178	2262115..2262312 [+], 198	hypothetical protein predicted by Glimmer/Critica
19	Bpet2179	2262312..2263130 [+], 819	unknown protein
20	Bpet2180	2263932..2264246 [+], 315	conserved hypothetical protein	TraF, T4SS component
21	Bpet2181	2264604..2264897 [-], 294	predicted transcriptional regulator
22	Bpet2182	2265103..2265450 [+], 348	probable lipoprotein
23	Bpet2183	2265793..2266584 [+], 792	conserved hypothetical protein
24	Bpet2184	2266653..2266949 [+], 297	hypothetical protein
25	Bpet2185	2266976..2267833 [+], 858	hypothetical replication initiator and transcription repressor protein
26	Bpet2186	2268087..2268725 [+], 639	putative partition protein
27	Bpet2187	2268722..2269006 [+], 285	conserved hypothetical protein
28	Bpet2188	2269003..2269548 [+], 546	probable transposon
29	traF1	2269545..2270144 [+], 600	conjugal transfer protein TraF	TraF, T4SS component
30	virD2	2270521..2272515 [+], 1995	probable conjugal transfer protein VirD2	Relaxase, MOBL Family
31	fadA2	2272658..2273791 [-], 1134	3-ketoacyl-CoA thiolase
32	Bpet2192	2274115..2275116 [-], 1002	predicted oxidoreductase
33	Bpet2193	2275144..2275611 [-], 468	conserved hypothetical protein
34	fadA3	2275624..2276808 [-], 1185	-
35	Bpet2195	2276828..2277355 [-], 528	Hypothetical UPF0152 protein HI1161.
36	Bpet2196	2277415..2277879 [+], 465	transcriptional regulator, MarR family
37	Bpet2197	2277876..2279153 [+], 1278	putative transmembrane transport protein
38	nerA	2279204..2279434 [+], 231	pseudogene
39	Bpetpseudo_09	2279400..2279561 [+], 162	pseudogene
40	Bpet2198	2279687..2280583 [-], 897	transcriptional regulator, LysR-family
41	Bpet2199	2280769..2281881 [+], 1113	putative threonine aldolase
42	Bpet2200	2282008..2282391 [+], 384	Probable tautomerase
43	Bpet2201	2282366..2283625 [+], 1260	probable MFS permease
44	Bpet2202	2283682..2284626 [+], 945	transcriptional regulator, LysR-family
45	Bpet2203	2284623..2284901 [+], 279	putative lipoprotein
46	traG1	2285138..2287141 [+], 2004	conjugal transfer protein TraG	VirD4, T4SS component
47	Bpet2205	2287138..2287602 [+], 465	putative DNA-binding protein
48	trbB1	2287599..2288681 [+], 1083	conjugal transfer protein TrbB	TrbB, T4SS component
49	trbC1	2288678..2289070 [+], 393	conjugal transfer protein TrbC	TrbC, T4SS component
50	trbD1	2289067..2289339 [+], 273	conjugal transfer protein TrbD	TrbD, T4SS component
51	trbE1	2289352..2291817 [+], 2466	conjugal transfer protein TrbE	TrbE, T4SS component
52	trbJ1	2291814..2292539 [+], 726	conjugal transfer protein TrbJ	TrbJ, T4SS component
53	Bpet2211	2292551..2292835 [+], 285	putative lipoprotein	TrbJ, T4SS component
54	trbL1	2292832..2294202 [+], 1371	conjugal transfer protein TrbL	TrbL, T4SS component
55	trbF1	2294215..2294919 [+], 705	conjugal transfer protein TrbF	TrbF, T4SS component
56	trbG1	2294916..2295908 [+], 993	conjugal transfer protein TrbG	TrbG, T4SS component
57	trbI1	2295911..2297191 [+], 1281	conjugal transfer protein TrbI	TrbI, T4SS component
58	Bpet2216	2297188..2297430 [+], 243	hypothetical protein
59	Bpet2217	2297655..2298419 [-], 765	conserved hypothetical protein
60	ugpQ	2298435..2299205 [-], 771	-
61	Bpet2219	2299708..2301669 [+], 1962	peptidyl-prolyl cis-trans isomerase D
62	tesA	2301654..2302286 [-], 633	acyl-CoA thioesterase I precursor

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	53	Fasta

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PubMed:19941653]

experimental literature

in silico analysis literature

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