ICEberg
I. Information of ICE
ICEberg ID193
Name ICE(Tn4371)6034 This is a predicted ICE derived from literature
OrganismShewanella sp. ANA-3
Size (bp)45233
GC content [Genome] (%)59.43[48.05]
Insertion siteTTTTTTAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000469 (complete ICE sequence in this genome)
Replicon chromosome 1 (4972204 bp, BioProject:13905) [NC_008577]
Genome coordinates1458447..1503679 
Putative oriT region -
Putative relaxase coordinates: 1481079..1483052; Locus tag: Shewana3_1268;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6034 is not available.



The graph information of ICE(Tn4371)6034 components from CP000469
Complete gene list of ICE(Tn4371)6034 from CP000469
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1Shewana3_12411455552..1457108 [+], 1557cytochrome bd ubiquinol oxidase, subunit I
2Shewana3_12421457124..1458263 [+], 1140cytochrome d ubiquinol oxidase, subunit II
3Shewana3_12431458282..1458398 [+], 117cyd operon protein YbgT
4Shewana3_12441458630..1459829 [+], 1200phage integrase family proteinIntegrase 
5Shewana3_12451459990..1460373 [+], 384protein of unknown function DUF1044
6Shewana3_12461460354..1460659 [+], 306transcriptional regulator-like protein
7Shewana3_12471460685..1461503 [+], 819conserved hypothetical protein
8Shewana3_12481461517..1462800 [+], 1284hypothetical protein
9Shewana3_12491462966..1463565 [-], 600ATPase-like protein
10Shewana3_12501463938..1465479 [+], 1542Integrase, catalytic region
11Shewana3_12511465494..1466249 [+], 756IstB domain protein ATP-binding protein
12Shewana3_12521466554..1467063 [+], 510DNA repair protein RadC
13Shewana3_12531467107..1467916 [-], 810hypothetical protein
14Shewana3_12541468067..1471351 [-], 3285DNA helicase related protein
15Shewana3_12551471427..1473172 [-], 1746hypothetical protein
16Shewana3_12561473237..1474130 [-], 894hypothetical protein
17Shewana3_12571474143..1475105 [-], 963Patatin
18Shewana3_12581475102..1475392 [-], 291transcriptional regulator, XRE family
19Shewana3_12591475678..1476007 [+], 330putative lipoprotein
20Shewana3_12611476330..1477127 [+], 798conserved hypothetical protein
21Shewana3_12621477211..1477495 [+], 285conserved hypothetical protein
22Shewana3_12631477522..1478379 [+], 858conserved hypothetical replication initiator and transcription repressor protein
23Shewana3_12641478666..1479304 [+], 639Cobyrinic acid a,c-diamide synthase
24Shewana3_12651479301..1479552 [+], 252conserved hypothetical protein
25Shewana3_12661479549..1480082 [+], 534conserved hypothetical protein
26Shewana3_12671480079..1480666 [+], 588TraF peptidase. Serine peptidase. MEROPS family S26CTraF, T4SS component 
27Shewana3_12681481079..1483052 [+], 1974conserved hypothetical proteinRelaxase, MOBL Family
28Shewana3_12691483049..1483843 [-], 795transcriptional regulator, XRE family
29Shewana3_12701483912..1485396 [+], 1485major facilitator superfamily MFS_1
30Shewana3_12711485411..1485686 [+], 276transcriptional regulator, LysR family
31Shewana3_12721485693..1485914 [+], 222hypothetical protein
32Shewana3_12731485995..1486189 [+], 195Smp-30/Cgr1 family protein
33Shewana3_12741486226..1486606 [+], 381Smp-30/Cgr1 family protein
34Shewana3_12751486964..1487641 [+], 678transcriptional regulator, IclR family
35Shewana3_12761487726..1488133 [+], 408protein of unknown function DUF336
36Shewana3_12771488130..1489353 [+], 1224major facilitator superfamily MFS_1
37Shewana3_12781489643..1490584 [+], 942transcriptional regulator, LysR family
38Shewana3_12791490581..1490844 [+], 264putative lipoprotein
39Shewana3_12801491078..1493075 [+], 1998TRAG family proteinVirD4, T4SS component 
40Shewana3_12811493072..1493536 [+], 465CopG domain protein DNA-binding domain protein
41Shewana3_12821493533..1494603 [+], 1071type II secretion system protein ETrbB, T4SS component 
42Shewana3_12831494600..1494986 [+], 387Conjugal transfer protein TrbCTrbC, T4SS component 
43Shewana3_12841494983..1495252 [+], 270putative conjugal transfer trbD transmembrane proteinTrbD, T4SS component 
44Shewana3_12851495263..1497713 [+], 2451AAA ATPaseTrbE, T4SS component 
45Shewana3_12861497710..1498453 [+], 744putative conjugal transfer TrbJ signal peptide proteinTrbJ, T4SS component 
46Shewana3_12871498466..1498783 [+], 318putative lipoproteinTrbJ, T4SS component 
47Shewana3_12881498780..1500162 [+], 1383TrbL/VirB6 plasmid conjugal transfer proteinTrbL, T4SS component 
48Shewana3_12891500181..1500885 [+], 705Conjugal transfer proteinTrbF, T4SS component 
49Shewana3_12901500882..1501874 [+], 993Conjugal transfer protein TrbG/VirB9/CagXTrbG, T4SS component 
50Shewana3_12911501877..1503157 [+], 1281conjugation TrbI family proteinTrbI, T4SS component 
51Shewana3_12921503154..1503399 [+], 246conserved hypothetical protein
52Shewana3_12931504135..1506138 [-], 2004methyl-accepting chemotaxis sensory transducer
53Shewana3_12941506398..1506643 [+], 246protein of unknown function DUF465
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins48Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PubMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU