ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	174
Name	PAGI-2
ICEO ID	ICEO_0000109
Organism	Pseudomonas aeruginosa C
Size (bp)	104955
GC content [Genome] (%)	64.71
Insertion site	tRNA-Gly
Function	Transport of heavy metals and ions, cytochrome c biogenesis, mercury resistance
Species that ICE can be transferred to	-
Nucleotide Sequence	AF440523 (complete ICE sequence in this GenBank file)
Replicon	-
Coordinates	27286..132240
Putative oriT region	-
Putative relaxase	coordinates: 63484..65376; Gene: ORF C36; Family: MOB_H

II. ICE interaction with IME/CIME/

The interaction information of PAGI-2 is not available.

The graph information of PAGI-2 components from AF440523

Complete gene list of PAGI-2 from AF440523
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	int	27514..29445 [+], 1932	putative integrase	Integrase
2	ORF C2	29645..30301 [-], 657	conserved hypothetical protein
3	ORF C3	30421..30714 [+], 294	conserved hypothetical protein
4	bphR	30736..31626 [-], 891	putative transcriptional regulator
5	ORF C5	31664..31987 [-], 324	hypothetical protein
6	ORF C6	32019..33395 [-], 1377	putative pyridine nucleotide-disulfide oxidoreductase, class I
7	ORF C7	33438..34244 [-], 807	conserved hypothetical membrane protein
8	dsbG	34335..35108 [-], 774	putative thiol:disulfide interchange protein
9	ORF C9	35111..35947 [-], 837	putative thiol:disulfide interchange protein
10	dsbD	35947..37800 [-], 1854	putative thiol:disulfide interchange protein
11	cycH	37883..38764 [-], 882	putative cytochrome c-type biogenesis protein CycH
12	cycL	38761..39216 [-], 456	putative cytochrome c-type biogenesis protein CycL precursor
13	ccmG	39213..39737 [-], 525	putative cytochrome C biogenesis protein CcmG
14	ccmF	39734..41695 [-], 1962	putative cytochrome C-type biogenesis protein CcmF
15	cycJ / ccmE	41699..42145 [-], 447	putative cytochrome C-type biogenesis protein CycJ
16	ccmD	42129..42320 [-], 192	putative heme exporter protein D
17	ccmC	42317..43054 [-], 738	putative heme exporter protein C
18	ccmB	43067..43753 [-], 687	putative cytochrome c maturation protein B
19	ccmA	43750..44361 [-], 612	putative heme exporter protein A
20	armR	44542..45210 [+], 669	putative response-regulator ArmR
21	armS	45207..46592 [+], 1386	putative sensor-kinase ArmS
22	cutE	46746..48344 [-], 1599	putative apolipoprotein N-acyltransferase
23	ORF C22	48369..50684 [-], 2316	putative metal transporter ATPase
24	ORF C23	50608..51705 [-], 1098	putative cytochrome c
25	ORF C24	51689..52507 [-], 819	putative cytochrome c4
26	fixO/ccoO	52504..53145 [-], 642	putative cytochrome-c oxidase
27	fixN/ccoN	53142..54698 [-], 1557	putative cytochrome-c oxidase
28	ORF C27	55217..56887 [-], 1671	conserved hypothetical protein
29	ORF C28	56936..57895 [-], 960	conserved hypothetical protein
30	ORF C29	58002..58529 [-], 528	conserved hypothetical protein
31	ORF C30	58552..58863 [-], 312	putative transcriptional activator
32	ORF C31	59013..60239 [+], 1227	similar to metabolite transport protein
33	ORF C32	60316..60693 [+], 378	conserved hypothetical protein
34	ORF C33	60804..61175 [+], 372	hypothetical protein
35	fenO	61235..62029 [-], 795	putative enoyl-CoA hydratase/isomerase
36	ORF C35	62441..63436 [+], 996	putative transcriptional regulator
37	ORF C36	63484..65376 [-], 1893	conserved hypothetical protein	Relaxase, MOB_H Family
38	ORF C37	65692..66318 [+], 627	conserved hypothetical protein
39	ORF C38	66331..66963 [+], 633	conserved hypothetical protein
40	ORF C39	67037..67396 [+], 360	conserved hypothetical protein
41	ORF C40	67412..68959 [-], 1548	hypothetical protein	Tfc19, T4SS component
42	ORF C41	68975..69331 [-], 357	hypothetical protein
43	ORF C42	69328..70722 [-], 1395	hypothetical protein	Tfc22, T4SS component
44	ORF C43	70732..71682 [-], 951	hypothetical protein	Tfc23, T4SS component
45	ORF C44	71679..72125 [-], 447	hypothetical protein	Tfc24, T4SS component
46	radC	72290..72784 [-], 495	putative DNA repair protein RadC
47	ORF C46	72960..73724 [-], 765	conserved hypothetical protein
48	ORF C47	73749..76580 [-], 2832	hypothetical protein	Tfc16, T4SS component
49	ORF C48	76641..77081 [-], 441	hypothetical protein	Tfc15, T4SS component
50	ORF C49	77062..78480 [-], 1419	hypothetical protein	Tfc14, T4SS component
51	ORF C50	78470..79381 [-], 912	hypothetical protein	Tfc13, T4SS component
52	ORF C51	79378..80070 [-], 693	hypothetical protein	Tfc12, T4SS component
53	ORF C52	80067..80465 [-], 399	hypothetical protein	Tfc11, T4SS component
54	ORF C53	80478..80837 [-], 360	hypothetical protein	Tfc10, T4SS component
55	ORF C54	80854..81087 [-], 234	hypothetical protein
56	ORF C55	81084..81467 [-], 384	hypothetical protein	Tfc9, T4SS component
57	ORF C56	81671..82141 [+], 471	putative excisionase
58	ORF C57	82138..82713 [+], 576	conserved hypothetical protein
59	ORF C58	82731..83645 [+], 915	conserved hypothetical protein
60	ORF C59	83642..84112 [+], 471	hypothetical protein
61	ORF C60	84109..84609 [+], 501	hypothetical protein
62	ORF C61	84609..85511 [+], 903	hypothetical protein
63	ORF C62	85316..86275 [+], 960	hypothetical protein
64	ORF C63	86285..88909 [+], 2625	hypothetical protein
65	ORF C64	88950..89699 [-], 750	hypothetical protein	Tfc8, T4SS component
66	ORF C65	89696..91885 [-], 2190	conserved hypothetical protein	Tfc6, T4SS component
67	ORF C66	91890..92438 [-], 549	hypothetical protein	Tfc5, T4SS component
68	ORF C67	92435..93025 [-], 591	conserved hypothetical protein	Tfc4, T4SS component
69	ORF C68	93007..93744 [-], 738	hypothetical protein	Tfc3, T4SS component
70	ORF C69	93757..94401 [-], 645	hypothetical protein	Tfc2, T4SS component
71	ORF C70	94398..94997 [-], 600	conserved hypothetical protein	Tfc2, T4SS component
72	ORF C71	95136..97415 [-], 2280	conserved hypothetical plasmid protein
73	ORF C72	97552..97857 [-], 306	hypothetical protein
74	ORF C73	97947..98267 [-], 321	hypothetical protein
75	ORF C74	98318..99427 [-], 1110	conserved hypothetical plasmid protein
76	ORF C75	99492..100139 [-], 648	hypothetical protein
77	ORF C76	100216..100476 [-], 261	conserved hypothetical protein
78	ORF C77	100493..100900 [-], 408	conserved hypothetical protein
79	ORF C78	101005..101346 [-], 342	conserved hypothetical plasmid protein
80	ORF C79	101441..102130 [-], 690	conserved hypothetical protein
81	ORF C80	102225..103052 [-], 828	conserved hypothetical protein; associated with oriT region on plasmids
82	ORF C81	103198..104196 [-], 999	conserved hypothetical protein
83	ORF C82	104414..104698 [-], 285	conserved hypothetical protein
84	ORF C83	105006..105266 [-], 261	conserved hypothetical protein
85	merA	106352..108040 [-], 1689	mercuric (Hg(II)) reductase
86	merP	108051..108338 [-], 288	periplasmic mercuric ion binding protein MerP
87	merT	108351..108701 [-], 351	mercuric transport protein MerT
88	merR	108773..109180 [+], 408	organomercurial resistance regulatory protein MerR
89	ORF C89	109442..110266 [-], 825	hypothetical protein
90	ORF C90	110555..110833 [-], 279	hypothetical protein
91	ORF C91	110931..111668 [-], 738	hypothetical protein
92	ORF C92	111752..112489 [-], 738	hypothetical protein
93	ORF C93	112621..113013 [-], 393	conserved hypothetical protein
94	ORF C94	113035..113448 [-], 414	conserved hypothetical protein
95	ORF C95	113585..113896 [-], 312	conserved hypothetical protein
96	lspA	114233..114733 [-], 501	putative lipoprotein signal peptidase LspA
97	ORF C97	114737..117649 [-], 2913	putative metal-transporting P-type ATPase
98	ORF C98	117741..118139 [+], 399	putative transcriptional regulator
99	ORF C99	118594..118830 [-], 237	hypothetical protein
100	ORF C100	119215..119850 [+], 636	putative integral membrane protein / transporter
101	topB	120574..122604 [-], 2031	putative DNA topoisomerase III
102	ssb	122888..123328 [-], 441	putative single-stranded DNA binding protein
103	ORF C103	123402..123929 [-], 528	conserved hypothetical protein
104	ORF C104	123926..124717 [-], 792	conserved hypothetical protein
105	ORF C105	125147..126385 [-], 1239	conserved hypothetical protein
106	ORF C106	126389..126949 [-], 561	conserved hypothetical protein
107	ORF C107	126964..128643 [-], 1680	conserved hypothetical protein
108	soj	128889..129764 [-], 876	putative chromosome partitioning related protein
109	ORF C109	129807..130028 [-], 222	phage-related protein
110	ORF C110	130138..130884 [-], 747	conserved hypothetical protein
111	ORF C111	131335..131835 [+], 501	hypothetical protein
112	rebB1	132450..132770 [-], 321	putative protein associated with synthesis and assembly of refractile inclusion bodies
113	rebB2	132833..133153 [-], 321	putative protein associated with synthesis and assembly of refractile inclusion bodies
114	ORF C/SG114	133304..133849 [-], 546	hypothetical protein
115	ORF C/SG115	133903..134142 [-], 240	hypothetical protein
116	ORF C/SG116	134371..136512 [-], 2142	hypothetical protein
117	ORF C/SG117	136563..137189 [-], 627	hypothetical protein

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	111	Fasta

(1) Larbig KD; Christmann A; Johann A; Klockgether J; Hartsch T; Merkl R; Wiehlmann L; Fritz HJ; Tummler B (2002). Gene islands integrated into tRNA(Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone. J Bacteriol. 184(23):6665-80. [PubMed:12426355]

experimental literature