ICEberg
I. Information of ICE
ICEberg ID166
Name ICE-KKS This ICE is derived from experimental literature
ICEO ID ICEO_0000099
OrganismAcidovorax sp. KKS102
Size (bp)61807
GC content [Genome] (%)63.97
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAB546270 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..61807 
Putative oriT region -
Putative relaxase coordinates: 25452..27551; Gene: traI;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE-KKS is not available.



The graph information of ICE-KKS components from AB546270
Complete gene list of ICE-KKS from AB546270
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-186..1388 [+], 1203integrase
2-1528..1911 [+], 384hypothetical protein
3-1895..2197 [+], 303hypothetical protein
4-2286..2753 [+], 468hypothetical protein
5-2753..3379 [+], 627hypothetical protein
6-3383..4519 [+], 1137hypothetical protein
7-4516..5178 [+], 663hypothetical protein
8-5195..5680 [-], 486hypothetical protein
9-5722..6309 [-], 588hypothetical protein
10-6313..7455 [-], 1143hypothetical protein
11radC7868..8374 [+], 507DNA repair protein RadC
12-8656..9006 [+], 351hypothetical protein
13-9037..9816 [-], 780hypothetical protein
14gene3210233..11057 [+], 825putative F plasmid gene 32-like protein
15parB11136..13196 [+], 2061ParB family protein
16-13404..13934 [-], 531hypothetical protein
17-14017..15168 [-], 1152chromate transporter
18arsC15566..15988 [-], 423arsenate reductase
19-16006..17091 [-], 1086arsenite transporter
20-17102..17599 [-], 498hypothetical protein
21-17612..18082 [-], 471Glyoxalase/bleomycin resistance protein
22-18096..18443 [-], 348ArsR family transcriptional regulator
23-18516..18875 [+], 360hypothetical protein
24-19172..19525 [+], 354hypothetical proteinTraF, T4SS component 
25-19591..19896 [-], 306XRE family transcriptional regulator
26-20137..20487 [+], 351Putative lipoprotein
27-20867..21571 [+], 705hypothetical protein
28xis21656..21937 [+], 282excisionase
29rep21964..22821 [+], 858plasmid replication protein
30parA23075..23713 [+], 639plasmid partitioning protein
31-23710..23994 [+], 285hypothetical protein
32-23991..24524 [+], 534hypothetical protein
33traF24521..25117 [+], 597conjugal transfer protein TraFTraF, T4SS component 
34traI25452..27551 [+], 2100relaxaseRelaxase, MOBL Family
35bphS27659..28423 [-], 765GntR family transcriptional regulator
36tnp28778..29743 [-], 966transposase
37bphE30255..31061 [+], 8072-hydroxypent-2,4-dienoate hydratase
38bphG31064..32014 [+], 951acetaldehyde dehydrogenase
39bphF32025..33083 [+], 10594-hydroxy-2-oxovalerate aldolase
40bphV33102..33512 [+], 411putative membrane protein
41bphA133572..34948 [+], 1377biphenyl dioxygenase alpha subunit
42bphA235119..35700 [+], 582biphenyl dioxygenase beta subunit
43bphA335718..36047 [+], 330biphenyl dioxygenase ferredoxin subunit
44bphB36066..36896 [+], 831cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
45bphC36911..37792 [+], 882dihydroxybiphenyl dioxygenase
46bphD37829..38689 [+], 8612-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid hydrolase
47bphW38817..39473 [+], 657putative outer membrane protein
48bphA439638..40864 [+], 1227biphenyl dioxygenase ferredoxin reductase subunit
49traR41158..42102 [+], 945LysR family transcriptional regulator
50traG42613..44640 [+], 2028conjugal transfer coupling protein TraGVirD4, T4SS component 
51-44637..45113 [+], 477hypothetical protein
52trbB45110..46177 [+], 1068conjugal transfer protein TrbBTrbB, T4SS component 
53trbC46174..46557 [+], 384conjugal transfer protein TrbCTrbC, T4SS component 
54trbD46554..46826 [+], 273conjugal transfer protein TrbDTrbD, T4SS component 
55trbE46842..49295 [+], 2454conjugal transfer protein TrbETrbE, T4SS component 
56trbJ49292..50017 [+], 726conjugal transfer protein TrbJTrbJ, T4SS component 
57-50030..50350 [+], 321lipoproteinTrbJ, T4SS component 
58trbL50347..51732 [+], 1386conjugal transfer protein TrbLTrbL, T4SS component 
59trbF51745..52449 [+], 705conjugal transfer protein TrbFTrbF, T4SS component 
60trbG52446..53429 [+], 984conjugal transfer protein TrbGTrbG, T4SS component 
61trbI53432..54718 [+], 1287conjugal transfer protein TrbITrbI, T4SS component 
62-54715..54933 [+], 219hypothetical protein
63-55918..58254 [+], 2337hypothetical protein
64-58251..60128 [+], 1878DNA helicase
65tnp60283..61230 [+], 948transposaseIntegrase 
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins65Fasta
(1) Ohtsubo Y; Ishibashi Y; Naganawa H; Hirokawa S; Atobe S; Nagata Y; Tsuda M (2012). Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element. J Bacteriol. 194(16):4237-48. [PubMed:22685277] experimental
(2) Ohtsubo Y; Goto H; Nagata Y; Kudo T; Tsuda M (2006). Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102. Mol Microbiol. 60(6):1563-75. [PubMed:16796688] experimental
(3) Ohtsubo Y; Delawary M; Kimbara K; Takagi M; Ohta A; Nagata Y (2001). BphS, a key transcriptional regulator of bph genes involved in polychlorinated biphenyl/biphenyl degradation in Pseudomonas sp. KKS102. J Biol Chem. 276(39):36146-54. [PubMed:11459836] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU