ICEberg
I. Information of ICE
ICEberg ID148
Name SXT(HN1) This ICE is derived from GenBank without published report
OrganismVibrio cholerae O1 biovar El tor HN1
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAB450045 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of SXT(HN1) is not available.



The graph information of SXT(HN1) components from AB450045
Incomplete gene list of SXT(HN1) from AB450045
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1int1..1242 [-], 1242integraseIntegrase 
2s0021244..1513 [-], 270hypothetical protein
3s0031516..2490 [-], 975hypothetical protein
4rumB3409..4581 [-], 1173RumB, UV repair DNA polymerase
5tnp4865..5458 [+], 594putative transposase
6tnpA5572..8550 [+], 2979putative transposase
7tnpB8968..10461 [+], 1494putative transposase
8s01310492..10776 [+], 285hypothetical protein
9tetA10840..12042 [-], 1203tetracycline resistance protein TetA
10tetR12123..12725 [+], 603tetracycline resistance repressor protein TetR
11tnpB12904..13443 [+], 540putative truncated transposase
12strB13415..14251 [-], 837streptomycin phosphotransferase
13strA14251..14742 [-], 492streptomycin phosphotransferase
14sulII15115..15930 [-], 816dihydropteroate synthase type II
15tnpA16401..17279 [+], 879putative transposase
16s02117482..18204 [-], 723hypothetical protein
17rumB18357..18665 [-], 309UV repair DNA polymerase RumB
18rumA18634..19083 [-], 450UV repair protein, RumA
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins18Fasta
-

Genomics & Bioinformatics Group in MML, SJTU