ICEberg
I. Information of ICE
ICEberg ID115
Name ICESe3 This is a predicted ICE derived from literature
OrganismSalmonella enterica SARC16
Size (bp)104487
GC content [Genome] (%)52.15
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFN298495 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates28577..133063 
Putative oriT region -
Putative relaxase coordinates: 130080..131708; Locus tag: S16_0153;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICESe3 is not available.



The graph information of ICESe3 components from FN298495
Complete gene list of ICESe3 from FN298495
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1S16_002524192..26405 [-], 2214putative RHS/VGR-family protein
2hcp26632..27150 [-], 519hcp (haemolysin co-regulated protein)
3S16_002727755..28015 [+], 261putative type VI secretion system protein (pseudogene)
4S16_002828015..28356 [+], 342putative type VI secretion system protein (pseudogene)
5S16_002928733..29740 [+], 1008hypothetical protein
6S16_003029737..30159 [+], 423hypothetical protein
7S16_003130156..31520 [+], 1365DNA helicase
8S16_003231513..33324 [+], 1812hypothetical protein
9S16_003333314..33538 [+], 225putative transcriptional regulator: zinc-finger
10S16_003433535..33798 [+], 264hypothetical protein
11S16_003533785..34507 [+], 723conserved hypothetical protein
12S16_003634571..35143 [+], 573conserved hypothetical protein
13S16_003735143..35391 [+], 249conserved hypothetical protein
14S16_003835512..36798 [+], 1287conserved hypothetical protein
15S16_003937291..38130 [+], 840conserved hypothetical protein
16topB38159..40177 [+], 2019DNA topoisomerase B
17S16_004140883..41332 [+], 450conserved hypothetical protein
18S16_004241413..41631 [+], 219conserved hypothetical protein
19ssB41644..42180 [+], 537single stranded binding protein
20S16_004442246..43244 [+], 999putative transposase
21S16_004543402..43632 [+], 231putative membrane protein
22pilL43728..44957 [+], 1230putative exported proteinTfc2, T4SS component 
23pilM44960..45397 [+], 438putative exported protein
24pilN45409..47091 [+], 1683PilN (lipoprotein)
25pilO47093..48373 [+], 1281putative pilus assembly protein
26S16_005148360..48953 [+], 594putative pilus assembly protein
27pilQ49123..50838 [+], 1716putative nucleotide-binding proteinTraJ_I, T4SS component 
28pilR50835..51920 [+], 1086putative membrane protein
29pilS51920..52555 [+], 636prepilin
30pilT52568..53047 [+], 480putative membrane proteinOrf169_F, T4SS component 
31pilU53044..53703 [+], 660putative prepilin peptidase
32pilV53703..55001 [+], 1299putative prepilin
33rci55545..56696 [+], 1152shufflon-specific DNA recombinaseIntegrase 
34pilK56792..57262 [+], 471putative exported protein
35S16_006157475..58350 [+], 876conserved hypothetical protein
36S16_006258496..59692 [+], 1197putative exported protein
37S16_006359757..60407 [+], 651conserved hypothetical protein
38S16_006460465..60986 [+], 522hypothetical protein
39S16_006561003..61275 [+], 273hypothetical protein
40S16_006661330..61593 [+], 264hypothetical protein
41S16_006761802..62722 [+], 921putative membrane proteinTfc2, T4SS component 
42S16_006862741..63481 [+], 741putative exported proteinTfc3, T4SS component 
43S16_006963460..64149 [+], 690putative lytic transglycosylaseTfc4, T4SS component 
44S16_007064146..64676 [+], 531conserved hypothetical proteinTfc5, T4SS component 
45S16_007164696..65259 [+], 564putative membrane protein
46S16_007265378..67534 [+], 2157putative membrane proteinTfc6, T4SS component 
47S16_007367527..68291 [+], 765putative membrane proteinTfc8, T4SS component 
48S16_007468439..68762 [+], 324putative membrane proteinTfc9, T4SS component 
49S16_007568759..68995 [+], 237putative membrane protein
50S16_007769019..69357 [+], 339putative membrane proteinTfc10, T4SS component 
51S16_007869366..69755 [+], 390putative membrane proteinTfc11, T4SS component 
52S16_007969752..70414 [+], 663possible membrane proteinTfc12, T4SS component 
53S16_008170411..71268 [+], 858putative exported proteinTfc13, T4SS component 
54S16_008271268..72755 [+], 1488putative membrane proteinTfc14, T4SS component 
55S16_008372769..73194 [+], 426putative lipoproteinTfc15, T4SS component 
56S16_008473194..75992 [+], 2799conserved hypothetical proteinTfc16, T4SS component 
57S16_008575989..76366 [+], 378conserved hypothetical proteinTfc17, T4SS component 
58S16_0090a76767..77878 [-], 1112putative transposase
59S16_009077612..77878 [-], 267putative transposase
60S16_009178143..79276 [+], 1134putative membrane protein
61etpB79882..81681 [+], 1800putative two partner secretion system
62etpA81889..88230 [+], 6342putative two partner secretion system
63etpC88345..90366 [+], 2022putative glycosylase
64S16_009590363..90917 [+], 555putative membrane protein
65S16_009891325..91819 [+], 495conserved hypothetical protein
66S16_009991812..92552 [+], 741hypothetical protein
67S16_010092549..92839 [+], 291putative regulator (pseudogene)
68ibrB92890..93523 [+], 634putative regulator (pseudogene)
69S16_010393546..93872 [+], 327conserved hypothetical protein
70Y106293926..95132 [-], 1207putative transposase (pseudogene)
71S16_010896377..96832 [-], 456conserved hypothetical protein
72S16_010996859..97290 [-], 432hypothetical protein
73S16_011097851..98441 [+], 591putative fimbrial protein precursor
74S16_011198504..100978 [+], 2475fimbrial usher protein precursor
75S16_0112100991..101722 [+], 732fimbrial chaperone protein precursor
76S16_0113101797..102756 [+], 960putative fimbrial protein
77S16_0114103044..103483 [-], 440putative transcriptional regulator-AraC family (pseudogene)
78S16_0118103783..104788 [-], 1006putative transposase (pseudogene)
79S16_0119104856..105083 [-], 228putative transposase (pseudogene)
80S16_0122106507..107174 [+], 668hypothetical protein (pseudogene)
81S16_0123107197..107523 [+], 327conserved hypothetical protein
82S16_0124107701..108084 [-], 384conserved hypothetical protein
83S16_0126108270..108547 [+], 278putative exported protein (pseudogene)
84S16_0127108874..109266 [+], 393putative exported proteinTfc24, T4SS component 
85S16_0128109263..110243 [+], 981putative exported proteinTfc23, T4SS component 
86S16_0129110256..111662 [+], 1407putative exported proteinTfc22, T4SS component 
87S16_0130111664..112047 [+], 384putative membrane protein
88S16_0131112058..113584 [+], 1527putative membrane proteinTfc19, T4SS component 
89S16_0132113623..114120 [-], 498hypothetical proteinTfc20, T4SS component 
90S16_0133114306..114653 [-], 348conserved hypothetical protein
91S16_0134115139..115762 [+], 624conserved hypothetical protein
92S16_0135116794..117702 [+], 909conserved hypothetical protein
93S16_0136117704..118078 [+], 375hypothetical protein
94S16_0137118433..118819 [+], 387conserved hypothetical protein (pseudogene)
95S16_0138118897..119265 [+], 369conserved hypothetical protein
96S16_0141119728..120311 [+], 584conserved hypothetical protein (pseudogene)
97S16_0143120308..120604 [+], 297conserved hypothetical protein
98S16_0144120682..121140 [+], 459conserved hypothetical protein
99S16_0145121230..123164 [+], 1935conserved hypothetical protein
100S16_0146123235..124143 [+], 909conserved hypothetical protein
101S16_0147124217..125116 [+], 900conserved hypothetical protein
102S16_0148125192..125518 [+], 327conserved hypothetical protein
103-125613..125879 [-], 267conserved hypothetical protein
104S16_0149125941..126396 [-], 456putative exported protein
105samB126605..127879 [-], 1275UV protection protein
106samA127879..128301 [-], 423UV protection protein (pseudogene)
107S16_0152128597..130090 [+], 1494putative DNA helicaseTraI_F, T4SS component 
108S16_0153130080..131708 [+], 1629putative relaxaseRelaxase, MOBH Family
109S16_0154131824..132837 [+], 1014putative phage integrase
110yqgA133245..133952 [-], 708putative membrane protein
111speC134377..136512 [+], 2136ornithine decarboxylase, constitutive (ec 4.1.1.17)
112S16_0156a136576..137373 [-], 798putative nucleoside permease
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins94Fasta
(1) Moreno Switt AI; den Bakker HC; Cummings CA; Rodriguez-Rivera LD; Govoni G; Raneiri ML; Degoricija L; Brown S; Hoelzer K; Peters JE; Bolchacova E; Furtado MR; Wiedmann M (2012). Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One. 7(7):e41247. [PubMed:22911766] in_silico
(2) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PubMed:22247511] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU