The graph information of ICESe3 components from FN298495 |
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Complete gene list of ICESe3 from FN298495 |
# | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation |
1 | S16_0025 | 24192..26405 [-], 2214 | putative RHS/VGR-family protein | |
2 | hcp | 26632..27150 [-], 519 | hcp (haemolysin co-regulated protein) | |
3 | S16_0027 | 27755..28015 [+], 261 | putative type VI secretion system protein (pseudogene) | |
4 | S16_0028 | 28015..28356 [+], 342 | putative type VI secretion system protein (pseudogene) | |
5 | S16_0029 | 28733..29740 [+], 1008 | hypothetical protein | |
6 | S16_0030 | 29737..30159 [+], 423 | hypothetical protein | |
7 | S16_0031 | 30156..31520 [+], 1365 | DNA helicase | |
8 | S16_0032 | 31513..33324 [+], 1812 | hypothetical protein | |
9 | S16_0033 | 33314..33538 [+], 225 | putative transcriptional regulator: zinc-finger | |
10 | S16_0034 | 33535..33798 [+], 264 | hypothetical protein | |
11 | S16_0035 | 33785..34507 [+], 723 | conserved hypothetical protein | |
12 | S16_0036 | 34571..35143 [+], 573 | conserved hypothetical protein | |
13 | S16_0037 | 35143..35391 [+], 249 | conserved hypothetical protein | |
14 | S16_0038 | 35512..36798 [+], 1287 | conserved hypothetical protein | |
15 | S16_0039 | 37291..38130 [+], 840 | conserved hypothetical protein | |
16 | topB | 38159..40177 [+], 2019 | DNA topoisomerase B | |
17 | S16_0041 | 40883..41332 [+], 450 | conserved hypothetical protein | |
18 | S16_0042 | 41413..41631 [+], 219 | conserved hypothetical protein | |
19 | ssB | 41644..42180 [+], 537 | single stranded binding protein | |
20 | S16_0044 | 42246..43244 [+], 999 | putative transposase | |
21 | S16_0045 | 43402..43632 [+], 231 | putative membrane protein | |
22 | pilL | 43728..44957 [+], 1230 | putative exported protein | Tfc2, T4SS component |
23 | pilM | 44960..45397 [+], 438 | putative exported protein | |
24 | pilN | 45409..47091 [+], 1683 | PilN (lipoprotein) | |
25 | pilO | 47093..48373 [+], 1281 | putative pilus assembly protein | |
26 | S16_0051 | 48360..48953 [+], 594 | putative pilus assembly protein | |
27 | pilQ | 49123..50838 [+], 1716 | putative nucleotide-binding protein | TraJ_I, T4SS component |
28 | pilR | 50835..51920 [+], 1086 | putative membrane protein | |
29 | pilS | 51920..52555 [+], 636 | prepilin | |
30 | pilT | 52568..53047 [+], 480 | putative membrane protein | Orf169_F, T4SS component |
31 | pilU | 53044..53703 [+], 660 | putative prepilin peptidase | |
32 | pilV | 53703..55001 [+], 1299 | putative prepilin | |
33 | rci | 55545..56696 [+], 1152 | shufflon-specific DNA recombinase | Integrase |
34 | pilK | 56792..57262 [+], 471 | putative exported protein | |
35 | S16_0061 | 57475..58350 [+], 876 | conserved hypothetical protein | |
36 | S16_0062 | 58496..59692 [+], 1197 | putative exported protein | |
37 | S16_0063 | 59757..60407 [+], 651 | conserved hypothetical protein | |
38 | S16_0064 | 60465..60986 [+], 522 | hypothetical protein | |
39 | S16_0065 | 61003..61275 [+], 273 | hypothetical protein | |
40 | S16_0066 | 61330..61593 [+], 264 | hypothetical protein | |
41 | S16_0067 | 61802..62722 [+], 921 | putative membrane protein | Tfc2, T4SS component |
42 | S16_0068 | 62741..63481 [+], 741 | putative exported protein | Tfc3, T4SS component |
43 | S16_0069 | 63460..64149 [+], 690 | putative lytic transglycosylase | Tfc4, T4SS component |
44 | S16_0070 | 64146..64676 [+], 531 | conserved hypothetical protein | Tfc5, T4SS component |
45 | S16_0071 | 64696..65259 [+], 564 | putative membrane protein | |
46 | S16_0072 | 65378..67534 [+], 2157 | putative membrane protein | Tfc6, T4SS component |
47 | S16_0073 | 67527..68291 [+], 765 | putative membrane protein | Tfc8, T4SS component |
48 | S16_0074 | 68439..68762 [+], 324 | putative membrane protein | Tfc9, T4SS component |
49 | S16_0075 | 68759..68995 [+], 237 | putative membrane protein | |
50 | S16_0077 | 69019..69357 [+], 339 | putative membrane protein | Tfc10, T4SS component |
51 | S16_0078 | 69366..69755 [+], 390 | putative membrane protein | Tfc11, T4SS component |
52 | S16_0079 | 69752..70414 [+], 663 | possible membrane protein | Tfc12, T4SS component |
53 | S16_0081 | 70411..71268 [+], 858 | putative exported protein | Tfc13, T4SS component |
54 | S16_0082 | 71268..72755 [+], 1488 | putative membrane protein | Tfc14, T4SS component |
55 | S16_0083 | 72769..73194 [+], 426 | putative lipoprotein | Tfc15, T4SS component |
56 | S16_0084 | 73194..75992 [+], 2799 | conserved hypothetical protein | Tfc16, T4SS component |
57 | S16_0085 | 75989..76366 [+], 378 | conserved hypothetical protein | Tfc17, T4SS component |
58 | S16_0090a | 76767..77878 [-], 1112 | putative transposase | |
59 | S16_0090 | 77612..77878 [-], 267 | putative transposase | |
60 | S16_0091 | 78143..79276 [+], 1134 | putative membrane protein | |
61 | etpB | 79882..81681 [+], 1800 | putative two partner secretion system | |
62 | etpA | 81889..88230 [+], 6342 | putative two partner secretion system | |
63 | etpC | 88345..90366 [+], 2022 | putative glycosylase | |
64 | S16_0095 | 90363..90917 [+], 555 | putative membrane protein | |
65 | S16_0098 | 91325..91819 [+], 495 | conserved hypothetical protein | |
66 | S16_0099 | 91812..92552 [+], 741 | hypothetical protein | |
67 | S16_0100 | 92549..92839 [+], 291 | putative regulator (pseudogene) | |
68 | ibrB | 92890..93523 [+], 634 | putative regulator (pseudogene) | |
69 | S16_0103 | 93546..93872 [+], 327 | conserved hypothetical protein | |
70 | Y1062 | 93926..95132 [-], 1207 | putative transposase (pseudogene) | |
71 | S16_0108 | 96377..96832 [-], 456 | conserved hypothetical protein | |
72 | S16_0109 | 96859..97290 [-], 432 | hypothetical protein | |
73 | S16_0110 | 97851..98441 [+], 591 | putative fimbrial protein precursor | |
74 | S16_0111 | 98504..100978 [+], 2475 | fimbrial usher protein precursor | |
75 | S16_0112 | 100991..101722 [+], 732 | fimbrial chaperone protein precursor | |
76 | S16_0113 | 101797..102756 [+], 960 | putative fimbrial protein | |
77 | S16_0114 | 103044..103483 [-], 440 | putative transcriptional regulator-AraC family (pseudogene) | |
78 | S16_0118 | 103783..104788 [-], 1006 | putative transposase (pseudogene) | |
79 | S16_0119 | 104856..105083 [-], 228 | putative transposase (pseudogene) | |
80 | S16_0122 | 106507..107174 [+], 668 | hypothetical protein (pseudogene) | |
81 | S16_0123 | 107197..107523 [+], 327 | conserved hypothetical protein | |
82 | S16_0124 | 107701..108084 [-], 384 | conserved hypothetical protein | |
83 | S16_0126 | 108270..108547 [+], 278 | putative exported protein (pseudogene) | |
84 | S16_0127 | 108874..109266 [+], 393 | putative exported protein | Tfc24, T4SS component |
85 | S16_0128 | 109263..110243 [+], 981 | putative exported protein | Tfc23, T4SS component |
86 | S16_0129 | 110256..111662 [+], 1407 | putative exported protein | Tfc22, T4SS component |
87 | S16_0130 | 111664..112047 [+], 384 | putative membrane protein | |
88 | S16_0131 | 112058..113584 [+], 1527 | putative membrane protein | Tfc19, T4SS component |
89 | S16_0132 | 113623..114120 [-], 498 | hypothetical protein | Tfc20, T4SS component |
90 | S16_0133 | 114306..114653 [-], 348 | conserved hypothetical protein | |
91 | S16_0134 | 115139..115762 [+], 624 | conserved hypothetical protein | |
92 | S16_0135 | 116794..117702 [+], 909 | conserved hypothetical protein | |
93 | S16_0136 | 117704..118078 [+], 375 | hypothetical protein | |
94 | S16_0137 | 118433..118819 [+], 387 | conserved hypothetical protein (pseudogene) | |
95 | S16_0138 | 118897..119265 [+], 369 | conserved hypothetical protein | |
96 | S16_0141 | 119728..120311 [+], 584 | conserved hypothetical protein (pseudogene) | |
97 | S16_0143 | 120308..120604 [+], 297 | conserved hypothetical protein | |
98 | S16_0144 | 120682..121140 [+], 459 | conserved hypothetical protein | |
99 | S16_0145 | 121230..123164 [+], 1935 | conserved hypothetical protein | |
100 | S16_0146 | 123235..124143 [+], 909 | conserved hypothetical protein | |
101 | S16_0147 | 124217..125116 [+], 900 | conserved hypothetical protein | |
102 | S16_0148 | 125192..125518 [+], 327 | conserved hypothetical protein | |
103 | - | 125613..125879 [-], 267 | conserved hypothetical protein | |
104 | S16_0149 | 125941..126396 [-], 456 | putative exported protein | |
105 | samB | 126605..127879 [-], 1275 | UV protection protein | |
106 | samA | 127879..128301 [-], 423 | UV protection protein (pseudogene) | |
107 | S16_0152 | 128597..130090 [+], 1494 | putative DNA helicase | TraI_F, T4SS component |
108 | S16_0153 | 130080..131708 [+], 1629 | putative relaxase | Relaxase, MOBH Family |
109 | S16_0154 | 131824..132837 [+], 1014 | putative phage integrase | |
110 | yqgA | 133245..133952 [-], 708 | putative membrane protein | |
111 | speC | 134377..136512 [+], 2136 | ornithine decarboxylase, constitutive (ec 4.1.1.17) | |
112 | S16_0156a | 136576..137373 [-], 798 | putative nucleoside permease | |