ICEberg
I. Information of ICE
ICEberg ID114
Name ICESb2 This is a predicted ICE derived from literature
OrganismSalmonella bongori 2022/77
Size (bp)101251
GC content [Genome] (%)49.59
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFN669609 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates564..84432 
Putative oriT region -
Putative relaxase coordinates: 81488..83077; Locus tag: Sb2_0891;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICESb2 is not available.



The graph information of ICESb2 components from FN669609
Complete gene list of ICESb2 from FN669609
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1Sb2_000196..404 [-], 309bacteriophage integrase (pseudogene)
2Sb2_0011698..1732 [+], 1035putative plasmid partitioning protein
3Sb2_00211729..3093 [+], 1365DNA helicase
4Sb2_00313086..4885 [+], 1800putative DNA binding protein
5Sb2_00414875..5102 [+], 228-
6Sb2_00515099..5359 [+], 261hypothetical protein
7Sb2_00615346..6068 [+], 723hypothetical protein
8Sb2_00716153..6710 [+], 558hypothetical protein
9Sb2_00816710..6958 [+], 249-
10Sb2_00916955..8298 [+], 1344hypothetical protein
11Sb2_01018714..9565 [+], 852hypothetical protein
12Sb2_01119604..11595 [+], 1992topoisomerase B
13Sb2_012112263..12712 [+], 450putative periplasmic protein
14Sb2_013112793..13011 [+], 219hypothetical protein
15Sb2_014113024..13560 [+], 537single strand binding protein
16Sb2_015113626..14564 [+], 939conserved hypothetical protein
17Sb2_016114729..15988 [+], 1260putative exported proteinTfc2, T4SS component 
18Sb2_017115991..16428 [+], 438putative exported protein
19Sb2_018116440..18122 [+], 1683pilus assembly protein
20Sb2_019118124..19410 [+], 1287putative pilus assembly protein
21Sb2_020119391..19978 [+], 588pilus assembly protein
22Sb2_021119988..21703 [+], 1716nucleotide-binding proteinTraJ_I, T4SS component 
23Sb2_022121700..22785 [+], 1086putative membrane protein
24Sb2_023122785..23420 [+], 636prepilin
25Sb2_024123430..23906 [+], 477putative membrane proteinOrf169_F, T4SS component 
26Sb2_025123903..24565 [+], 663prepilin peptidase
27Sb2_026124562..25989 [+], 1428prepilin
28Sb2_027127218..27724 [+], 507putative acetyltransferase
29Sb2_028128832..29983 [+], 1152shufflon-specific DNA recombinaseIntegrase 
30Sb2_029130080..30547 [+], 468putative exported protein
31Sb2_030130761..31636 [+], 876putative traE protein
32traF31747..32943 [+], 1197putative exported protein
33Sb2_032133006..33644 [+], 639hypothetical protein
34Sb2_033133676..34938 [+], 1263conserved hypothetical protein (pseudogene)
35Sb2_034133957..34682 [-], 726putative membrane protein
36Sb2_035134895..35809 [+], 915putative plasmid transfer protein
37Sb2_036135828..36568 [+], 741putative traG proteinTfc3, T4SS component 
38Sb2_037136547..37233 [+], 687putative traL proteinTfc4, T4SS component 
39Sb2_038137230..37769 [+], 540putative traW proteinTfc5, T4SS component 
40Sb2_039137779..38348 [+], 570putative membrane protein
41Sb2_040138368..40458 [+], 2091putative traD proteinTfc6, T4SS component 
42Sb2_041140455..41213 [+], 759putative maturase proteinTfc8, T4SS component 
43Sb2_042141377..41703 [+], 327putative effector proteinTfc9, T4SS component 
44Sb2_043141703..41942 [+], 240putative membrane protein
45Sb2_044141972..42334 [+], 363putative membrane proteinTfc10, T4SS component 
46Sb2_045142344..42718 [+], 375-Tfc11, T4SS component 
47Sb2_046142715..43368 [+], 654putative DnaA chromosomal replication proteinTfc12, T4SS component 
48Sb2_047143368..44267 [+], 900hypothetical proteinTfc13, T4SS component 
49Sb2_048144257..45735 [+], 1479putative traB proteinTfc14, T4SS component 
50Sb2_049145722..46171 [+], 450putative secreted peptidaseTfc15, T4SS component 
51Sb2_050146168..49008 [+], 2841hypothetical proteinTfc16, T4SS component 
52Sb2_051149163..49549 [+], 387hypothetical proteinTfc17, T4SS component 
53Sb2_052149704..50096 [+], 393putative ATP binding proteinTfc24, T4SS component 
54Sb2_053150093..51061 [+], 969putative traU proteinTfc23, T4SS component 
55Sb2_054151076..52506 [+], 1431putative ATP binding proteinTfc22, T4SS component 
56Sb2_055152503..52844 [+], 342putative membrane protein
57Sb2_056152848..54353 [+], 1506putative traG proteinTfc19, T4SS component 
58Sb2_057154389..54778 [-], 390putative membrane protein
59Sb2_058155002..55361 [-], 360possible exported protein
60Sb2_059155384..55551 [+], 168-
61Sb2_060155648..56895 [+], 1248putative ybdN protein
62Sb2_061156880..57521 [+], 642putative plasmid replication protein
63Sb2_062157605..58351 [+], 747putative MipA-domain protein
64Sb2_063158440..59048 [-], 609hypothetical protein
65Sb2_064160362..61282 [+], 921putative DNA binding protein
66Sb2_065161752..62261 [+], 510putative topoisomerase
67Sb2_066162358..62738 [+], 381putative DNA binding protein
68Sb2_067163204..63788 [+], 585hypothetical protein
69Sb2_068163785..64081 [+], 297hypothetical protein
70Sb2_069164159..64617 [+], 459putative membrane protein
71Sb2_070164706..66649 [+], 1944putative membrane protein
72Sb2_071166719..67627 [+], 909conserved hypothetical protein
73Sb2_072167705..68604 [+], 900putative ABC tranporter
74Sb2_073168681..69007 [+], 327conserved hypothetical protein
75Sb2_074169107..69376 [-], 270hypothetical protein
76Sb2_075169508..70782 [-], 1275UV protection protein
77samA70782..71204 [-], 423UV protection protein
78Sb2_077171546..72019 [-], 474conserved hypothetical protein
79Sb2_078172391..73038 [+], 648putative fluoroquinolone resistance protein
80Sb2_079173750..74127 [+], 378putative SH3 domain protein
81Sb2_080174251..74643 [+], 393putative Glyoxalase/Bleomycin resistance protein
82Sb2_081174901..75188 [+], 288hypothetical protein
83Sb2_082175199..76083 [+], 885Putative methyltransferase
84Sb2_083176083..76829 [+], 747conserved hypothetical protein
85Sb2_084176891..77502 [+], 612putative dienelactone hydrolase
86Sb2_085178013..78873 [-], 861putative AraC family transcriptional regulator
87Sb2_086179351..79557 [-], 207putative kinase (partial)
88Sb2_087179605..79868 [+], 264hypothetical protein
89Sb2_088179993..81504 [+], 1512putative DNA helicaseTraI_F, T4SS component 
90Sb2_089181488..83077 [+], 1590hypothetical proteinRelaxase, MOBH Family
91Sb2_090183241..84254 [+], 1014probable phage integrase
92Sb2_091184614..85321 [-], 708putative membrane protein
93speC85747..87882 [+], 2136ornithine decarboxylase
94nupG87944..89200 [-], 1257nucleoside permease
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins88Fasta
(1) Moreno Switt AI; den Bakker HC; Cummings CA; Rodriguez-Rivera LD; Govoni G; Raneiri ML; Degoricija L; Brown S; Hoelzer K; Peters JE; Bolchacova E; Furtado MR; Wiedmann M (2012). Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One. 7(7):e41247. [PubMed:22911766] in_silico
(2) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PubMed:22247511] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU