 ICEberg ID | 1106 |
Name  | ICEMcSym(1271)-γ  |
| ICEO ID | ICEO_0000196 |
| Organism | Mesorhizobium ciceri WSM1271 |
| Size (bp) | 7759 |
| GC content [Genome] (%) | - |
| Insertion site | - |
| Function | γ region of the tripartite ICE |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | NC_014923 (complete ICE sequence in this genome) |
| Replicon | - |
| Genome coordinates | 2444639..2452398 |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of ICEMcSym(1271)-γ components from NC_014923 | |||||
 | |||||
| Complete gene list of ICEMcSym(1271)-γ from NC_014923 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | Mesci_2340 | 2440018..2442249 [-], 2232 | OmpA/MotB domain-containing protein | ||
| 2 | Mesci_2341 | 2442447..2442893 [+], 447 | hypothetical protein | ||
| 3 | Mesci_2342 | 2443147..2443503 [+], 357 | hypothetical protein | ||
| 4 | Mesci_2343 | 2443715..2444428 [-], 714 | hypothetical protein | ||
| 5 | Mesci_2344 | 2444746..2445936 [-], 1191 | integrase family protein | Integrase | |
| 6 | Mesci_2345 | 2446248..2446499 [-], 252 | hypothetical protein | ||
| 7 | Mesci_2346 | 2446947..2448806 [-], 1860 | hypothetical protein | ||
| 8 | Mesci_2347 | 2448803..2449249 [-], 447 | hypothetical protein | ||
| 9 | Mesci_2348 | 2449246..2450460 [-], 1215 | hypothetical protein | ||
| 10 | Mesci_2349 | 2450921..2452186 [-], 1266 | integrase family protein | Integrase | |
| 11 | Mesci_2350 | 2452793..2453665 [-], 873 | AraC type helix-turn-helix- domain containing protein | ||
| 12 | Mesci_2351 | 2453772..2455043 [+], 1272 | family 1 extracellular solute-binding protein | ||
| 13 | Mesci_2352 | 2455250..2456110 [+], 861 | binding-protein-dependent transport system inner membrane protein | ||
| 14 | Mesci_2353 | 2456107..2456943 [+], 837 | binding-protein-dependent transport system inner membrane protein | ||
 Flanking regions |
| (1) Haskett TL; Ramsay JP; Bekuma AA; Sullivan JT; O'Hara GW; Terpolilli JJ (2017). Evolutionary persistence of tripartite integrative and conjugative elements. Plasmid. 92:30-36. [PubMed:28669811] |
| (2) Haskett TL; Terpolilli JJ; Bekuma A; O'Hara GW; Sullivan JT; Wang P; Ronson CW; Ramsay JP (2016). Assembly and transfer of tripartite integrative and conjugative genetic elements. Proc Natl Acad Sci U S A. 113(43):12268-12273. [PubMed:27733511] |
| (3) Reeve W; Nandasena K; Yates R; Tiwari R; O'Hara G; Ninawi M; Gu W; Goodwin L; Detter C; Tapia R; Han C; Copeland A; Liolios K; Chen A; Markowitz V; Pati A; Mavromatis K; Woyke T; Kyrpides N; Ivanova N; Howieson J (2013). Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)). Stand Genomic Sci. 9(2):410-9. [PubMed:24976896] |
(4) Reeve W; Nandasena K; Yates R; Tiwari R; O'Hara G; Ninawi M; Chertkov O; Goodwin L; Bruce D; Detter C; Tapia R; Han S; Woyke T; Pitluck S; Nolan M; Land M; Copeland A; Liolios K; Pati A; Mavromatis K; Markowitz V; Kyrpides N; Ivanova N; Goodwin L; Meenakshi U; Howieson J (2013). Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.). Stand Genomic Sci. 9(2):294-303. [PubMed:24976886] 
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| experimental literature |
| in silico analysis literature |