ICEberg
I. Information of ICE
ICEberg ID1102
Name ICEMcSym(1284)-β This is a predicted ICE derived from literature
OrganismMesorhizobium ciceri WSM1284
Size (bp)17270
GC content [Genome] (%)-
Insertion site-
Functionβ region of the tripartite ICE
Species that ICE can be transferred to-
Nucleotide SequenceCP015064 (complete ICE sequence in this genome)
Replicon-
Genome coordinates4374750..4392020 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEMcSym(1284)-β is not available.



The graph information of ICEMcSym(1284)-β components from CP015064
Complete gene list of ICEMcSym(1284)-β from CP015064
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1A4R29_205604370715..4372334 [+], 16205-oxoprolinase
2A4R29_205654372331..4373533 [+], 1203aspartate aminotransferase
3A4R29_205704373537..4374349 [+], 813NAD-dependent dehydratase
4A4R29_205754375053..4375598 [-], 546hypothetical protein
5A4R29_205804375595..4376704 [-], 1110His-Xaa-Ser system radical SAM maturase HxsC
6A4R29_205854376701..4378110 [-], 1410His-Xaa-Ser system radical SAM maturase HxsB
7A4R29_205904378107..4378526 [-], 420hypothetical protein
8A4R29_205954378564..4379304 [-], 741hypothetical protein
9A4R29_206004379321..4379800 [-], 480hypothetical protein
10A4R29_206054379800..4381668 [-], 1869hypothetical protein
11A4R29_206104381669..4381932 [+], 264hypothetical protein
12A4R29_206154382668..4388235 [-], 5568helicase
13A4R29_206204388637..4389035 [-], 399hypothetical protein
14A4R29_206254390447..4391700 [-], 1254integraseIntegrase 
15guaA4392016..4393578 [-], 1563glutamine-hydrolyzing GMP synthase
16A4R29_206354393627..4394295 [-], 6695'-methylthioadenosine nucleosidase
17A4R29_206404394437..4394895 [-], 459phenylacetic acid degradation protein
18A4R29_206454395036..4396325 [-], 1290MFS transporter
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins11Fasta
(1) Haskett TL; Terpolilli JJ; Bekuma A; O'Hara GW; Sullivan JT; Wang P; Ronson CW; Ramsay JP (2016). Assembly and transfer of tripartite integrative and conjugative genetic elements. Proc Natl Acad Sci U S A. 113(43):12268-12273. [PubMed:27733511]
 

Genomics & Bioinformatics Group in MML, SJTU