ICEberg ID | 110 |
Name | bph-sal |
ICEO ID | ICEO_0000718 |
Organism | Pseudomonas putida KF715 |
Size (bp) | ~90 kb |
GC content [Genome] (%) | - |
Insertion site | - |
Function | - |
Species that ICE can be transferred to | - |
Nucleotide Sequence | AY275274; AY294313 (partial ICE sequence) |
Putative oriT region | - |
Putative relaxase | - |
The graph information of bph-sal components from AY275274 | |||||
Incomplete gene list of bph-sal from AY275274 | |||||
# | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
1 | int | 1..1896 [+], 1896 | integrase | Integrase |
The graph information of bph-sal components from AY294313 | |||||
Incomplete gene list of bph-sal from AY294313 | |||||
# | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
1 | nahR | 305..1207 [-], 903 | NahR | ||
2 | nahG | 1363..2676 [+], 1314 | salicylate hydroxylase | ||
3 | nahT | 3119..3457 [+], 339 | xylT-like ferredoxin | ||
4 | nahH | 3454..4377 [+], 924 | catechol 2,3-dioxygenase | ||
5 | nahI | 4412..5872 [+], 1461 | hydoroxymuconic semialdehyde dehydrogenase | ||
6 | nahN | 5883..6731 [+], 849 | hydoroxymuconic semialdehyde hydrolase | ||
7 | nahL | 6728..7528 [+], 801 | 2-oxopent-4-enoate hydratase | ||
8 | nahO | 7543..8466 [+], 924 | acetaldehyde dehydrogenase | ||
9 | nahM | 8479..9519 [+], 1041 | 2-oxo-4-hydroxypentanoate aldolase | ||
10 | nahK | 9516..10310 [+], 795 | 4-oxalocrotonate decarboxylase | ||
11 | nahJ | 10359..10550 [+], 192 | 4-oxalocrotonate isomerase |
(1) Nishi A; Tominaga K; Furukawa K (2000). A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715. J Bacteriol. 182(7):1949-55. [PubMed:10715002] |
experimental literature |