ICEberg
I. Information of ICE
ICEberg ID1094
Name Trb-2 This is a predicted ICE derived from literature
OrganismLegionella pneumophila Corby
Size (bp)34434
GC content [Genome] (%)40.52
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000675 (complete ICE sequence in this genome)
Replicon-
Genome coordinates181809..215779 
Putative oriT region -
Putative relaxase coordinates: 202055..203929;   Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of Trb-2 is not available.



The graph information of Trb-2 components from CP000675
Complete gene list of Trb-2 from CP000675
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1LPC_0161177749..179083 [+], 1335hypothetical protein conserved within Legionellae
2prlC179183..181198 [+], 2016oligopeptidase A
3LPC_0163181312..181422 [+], 111hypothetical protein
4LPC_0164181809..181970 [+], 162hypothetical protein
5LPC_0165182031..183335 [-], 1305hypothetical protein
6LPC_0166183470..184129 [-], 660phage repressor
7lvrA2184300..185184 [+], 885Legionella vir region protein
8lvrB2185201..185512 [+], 312Legionella vir region protein
9csrA185531..185797 [+], 267global regulator (carbon storage regulator)
10LPC_0170185810..186775 [+], 966LvhB11
11trbC186788..187165 [+], 378Conjugal transfer protein trbC
12trbD187162..187461 [+], 300Conjugal transfer protein trbD
13trbE187458..189995 [+], 2538Conjugal transfer protein trbE precursor
14trbF189992..190735 [+], 744Conjugal transfer protein trbF
15trbG190732..191607 [+], 876conjugal transfer protein trbG precursor
16LPC_0176191610..192020 [+], 411hypothetical protein
17trbI192026..193267 [+], 1242Conjugal transfer protein trbI
18trbJ193281..194021 [+], 741Conjugal transfer protein trbJ precursor
19LPC_0179194051..194263 [+], 213hypothetical protein
20trbL194211..195683 [+], 1473Probable conjugal transfer protein trbL
21traG195680..197569 [+], 1890Conjugal transfer protein traG
22traF197566..198111 [+], 546Conjugal transfer protein traF precursor
23traD198108..198272 [+], 165Protein traD
24traC198265..200451 [+], 2187DNA primase traC (Replication primase)
25LPC_0185200533..200904 [-], 372hypothetical protein
26LPC_0186200882..201940 [-], 1059hypothetical protein
27traI202055..203929 [-], 1875TraI protein
28traJ203926..204279 [-], 354TraJ protein (Relaxosome protein)
29LPC_0190207613..208338 [+], 726hypothetical protein
30LPC_0191208338..208793 [+], 456hypothetical protein
31LPC_0192208807..209451 [+], 645hypothetical protein
32LPC_0193209495..209956 [-], 462cytidine/deoxycytidylate deaminase
33LPC_0194209934..211376 [-], 1443hypothetical protein
34LPC_0195211369..211728 [-], 360hypothetical protein
35LPC_0196211746..212399 [-], 654hypothetical protein
36LPC_0197212528..212776 [+], 249hypothetical protein
37LPC_0198212810..213016 [+], 207hypothetical protein
38LPC_0199213091..214170 [+], 1080Putative lambdoid prophage Rac integrase
39LPC_0200214176..214991 [-], 816hypothetical protein
40LPC_0201214988..215779 [-], 792hypothetical protein
41LPC_0202216356..217576 [+], 1221Integrase
42LPC_0203217598..218434 [+], 837DNA-damage-inducible protein D
43LPC_0204218455..219234 [+], 780hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins37Fasta
(1) Glockner G; Albert-Weissenberger C; Weinmann E; Jacobi S; Schunder E; Steinert M; Hacker J; Heuner K (2008). Identification and characterization of a new conjugation/type IVA secretion system (trb/tra) of Legionella pneumophila Corby localized on two mobile genomic islands. Int J Med Microbiol. 298(5-6):411-28. [PubMed:17888731] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU