ICEberg
I. Information of ICE
ICEberg ID1091
Name Trb-1 This ICE is derived from experimental literature
ICEO ID ICEO_0000186
OrganismLegionella pneumophila Corby
Size (bp)42710
GC content [Genome] (%)39.44
Insertion sitetRNAPro (lpc2778)
Function-
Species that ICE can be transferred toLegionella pneumophila JR32 Sm; Legionella micdadei (ATCC 33218)
Nucleotide SequenceCP000675 (complete ICE sequence in this genome)
Replicon-
Genome coordinates614497..656813 
Putative oriT region -
Putative relaxase coordinates: 635310..637175;   Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of Trb-1 is not available.



The graph information of Trb-1 components from CP000675
Complete gene list of Trb-1 from CP000675
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1LPC_2826609848..610696 [-], 849hypothetical protein
2LPC_2825611033..611500 [-], 468hypothetical protein
3LPC_2824611484..612242 [-], 759methyltransferase, ubiE/COQ5 family
4LPC_2823612208..612816 [-], 609hypothetical protein
5LPC_2822612813..613280 [-], 468acetyltransferase, GNAT family
6LPC_2821613277..613435 [-], 159hypothetical protein
7aacA4613432..613995 [-], 564aminoglycoside N (6')-acetyltransferase
8LPC_2819614497..615231 [+], 735hypothetical protein
9LPC_2818615234..616457 [+], 1224site specific recombinase
10LPC_2817616462..616881 [+], 420hypothetical protein
11LPC_2816616983..617657 [-], 675hypothetical protein
12lvrA3617842..618723 [+], 882Legionella vir region protein
13lvrB3618740..619048 [+], 309Legionella vir region protein
14csrA619069..619335 [+], 267global regulator (carbon storage regulator)
15virB11619346..620311 [+], 966LvhB11
16LPC_2811620323..620700 [+], 378hypothetical protein
17trbD620751..620996 [+], 246Conjugal transfer protein trbD
18trbE620993..623518 [+], 2526Conjugal transfer protein trbE precursor
19trbF623515..624258 [+], 744Conjugal transfer protein trbF
20trbG624255..625130 [+], 876Conjugal transfer protein trbG precursor
21LPC_2806625133..625543 [+], 411hypothetical protein
22trbI625549..626799 [+], 1251Conjugal transfer protein trbI
23trbJ626815..627555 [+], 741Conjugal transfer protein trbJ precursor
24LPC_2803627582..627794 [+], 213hypothetical protein
25trbL627799..629196 [+], 1398Conjugal transfer protein trbL
26traG629193..631082 [+], 1890Conjugal transfer protein traG
27traF631079..631624 [+], 546Plasmid transfer protein traF precursor
28traD631621..631785 [+], 165traD protein
29traC631778..633964 [+], 2187DNA primase traC (Replication primase)
30LPC_2797633966..634424 [-], 459hypothetical protein
31LPC_2796634435..635202 [-], 768hypothetical protein
32traI635310..637175 [-], 1866traI protein
33traJ637172..637525 [-], 354traJ protein
34traK637940..638266 [+], 327TraK
35traL638266..638991 [+], 726traL protein
36traM638991..639440 [+], 450traM protein
37LPC_2790639466..641496 [+], 2031Putative type I restriction enzyme HindVIIP M protein
38LPC_2789641493..642767 [+], 1275hypothetical protein
39LPC_2788642764..645745 [+], 2982Putative type I restriction enzyme R protein
40LPC_2787645773..647026 [+], 1254hypothetical protein
41LPC_2786647023..648783 [+], 1761hypothetical protein
42LPC_2785648787..652206 [+], 3420putative RNA helicase
43LPC_2784652210..652533 [-], 324hypothetical protein
44LPC_2782654017..655219 [+], 1203proline/betaine transporter
45LPC_2781655222..655566 [+], 345hypothetical protein
46LPC_2780655647..655844 [+], 198hypothetical protein
47LPC_2779655907..656674 [-], 768hypothetical protein
48lvgA657116..657742 [+], 627hypothetical virulence protein
49LPC_2776657772..658149 [-], 378hypothetical protein
50LPC_2775658299..659438 [-], 1140Predicted signal transduction protein containing EAL and modified HD-GYP domains
51sdhC659759..660133 [+], 375succinate dehydrogenase cytochrome b556 subunit C
52sdhD660127..660474 [+], 348succinate dehydrogenase hydrophobic membrane anchor protein subunit D
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins40Fasta
(1) Lautner M; Schunder E; Herrmann V; Heuner K (2013). Regulation, integrase-dependent excision, and horizontal transfer of genomic islands in Legionella pneumophila. J Bacteriol. 195(7):1583-97. [PubMed:23354744] experimental in_silico
(2) Glockner G; Albert-Weissenberger C; Weinmann E; Jacobi S; Schunder E; Steinert M; Hacker J; Heuner K (2008). Identification and characterization of a new conjugation/type IVA secretion system (trb/tra) of Legionella pneumophila Corby localized on two mobile genomic islands. Int J Med Microbiol. 298(5-6):411-28. [PubMed:17888731] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU