ICEberg
I. Information of ICE
ICEberg ID1085
Name Pac_ICE3_cl This is a predicted ICE derived from literature
OrganismPseudomonas syringae pv. Actinidiae ICMP19455
Size (bp)100782
GC content [Genome] (%)54.85
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC148188 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..100782 
Putative oriT region -
Putative relaxase coordinates: 1959..3899;   Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of Pac_ICE3_cl is not available.



The graph information of Pac_ICE3_cl components from KC148188
Complete gene list of Pac_ICE3_cl from KC148188
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-268..393 [+], 126hypothetical protein
2-547..1962 [-], 1416integrase
3-1959..3899 [-], 1941pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase E2 componentRelaxase, MOBH Family
4-4383..6368 [-], 1986methyl-accepting chemotaxis protein I
5-6706..8232 [-], 1527mobile element protein
6-8316..8681 [-], 366ISPpu14 transposase
7-8648..8980 [-], 333hypothetical protein
8-9430..9585 [-], 156hypothetical protein
9-10583..11176 [+], 594hypothetical protein
10-11311..11448 [+], 138hypothetical protein
11-11417..11542 [-], 126hypothetical protein
12-11918..12610 [-], 693protein of unknown function DUF159
13-12721..13155 [+], 435error-prone repair protein UmuD
14-13142..14422 [+], 1281error-prone lesion bypass DNA polymerase V
15-14871..15020 [-], 150hypothetical protein
16-15043..16575 [-], 1533putative membrane proteinTfc19, T4SS component 
17-16572..16892 [-], 321hypothetical protein
18-16949..18316 [-], 1368hypothetical proteinTfc22, T4SS component 
19-18337..19278 [-], 942hypothetical proteinTfc23, T4SS component 
20-19275..19562 [-], 288protein of unknown function DUF1525Tfc24, T4SS component 
21-19916..20104 [+], 189hypothetical protein
22-20162..20425 [+], 264hypothetical protein
23-20540..20692 [-], 153hypothetical protein
24-20648..20776 [+], 129hypothetical protein
25-20893..21063 [-], 171hypothetical protein
26-21101..21220 [+], 120hypothetical protein
27-21266..21961 [-], 696protein-disulfide isomerase
28-21958..22257 [-], 300hypothetical protein
29-22254..25271 [-], 3018type IV secretory pathway VirB4 componentTfc16, T4SS component 
30-25271..25720 [-], 450putative lipoproteinTfc15, T4SS component 
31-25704..27191 [-], 1488putative exported proteinTfc14, T4SS component 
32-27181..28104 [-], 924hypothetical proteinTfc13, T4SS component 
33-28101..28769 [-], 669putative exported proteinTfc12, T4SS component 
34-28766..29158 [-], 393hypothetical proteinTfc11, T4SS component 
35-29174..29539 [-], 366hypothetical proteinTfc10, T4SS component 
36-29559..29798 [-], 240hypothetical protein
37-29795..30016 [-], 222putative type III effector hop proteinTfc9, T4SS component 
38-30036..30194 [-], 159hypothetical protein
39-30237..30569 [-], 333aconitase B
40-30579..32042 [-], 1464putative DNA helicaseTraI_F, T4SS component 
41-32052..32801 [-], 750putative membrane proteinTfc8, T4SS component 
42-32838..34997 [-], 2160type IV secretory pathway VirD4 componentTfc6, T4SS component 
43-35009..35515 [-], 507hypothetical proteinTfc5, T4SS component 
44-35512..36069 [-], 558soluble lytic murein transglycosylase-related regulatory proteinTfc4, T4SS component 
45-36054..36800 [-], 747putative exported protein STY4558Tfc3, T4SS component 
46-36809..37510 [-], 702methyl-accepting chemotaxis proteinTfc2, T4SS component 
47-37602..37997 [-], 396hypothetical protein
48-38219..39142 [-], 924transcriptional regulator AraC family
49-39300..40058 [+], 759oxidoreductase short chain dehydrogenase/reductase family
50-40109..40819 [+], 711glutathione S-transferase
51-40900..41286 [+], 387hypothetical protein
52-41287..41424 [-], 138hypothetical protein
53-41478..43736 [-], 2259superfamily II DNA/RNA helicases SNF2 family
54-43833..45293 [-], 1461plasmid-related protein
55-45296..45922 [-], 627hypothetical protein
56-45988..46512 [-], 525hypothetical protein
57-46598..47209 [-], 612hypothetical protein
58-47311..47646 [-], 336hypothetical protein
59-47747..48049 [-], 303hypothetical protein
60-48126..48281 [-], 156hypothetical protein
61-48352..48906 [-], 555periplasmic protein TonB
62-49271..49636 [-], 366hypothetical protein
63-49926..50195 [-], 270hypothetical protein
64-51000..53021 [-], 2022DNA topoisomerase III
65-53240..54334 [-], 1095hypothetical protein
66-54536..55498 [+], 963SAM-like phage integraseIntegrase 
67-55472..55717 [-], 246hypothetical protein
68-56213..56593 [-], 381putative lipoprotein
69-56923..57915 [-], 993surface antigen
70-58073..58969 [-], 897LysR family transcriptional regulator YeiE
71-59114..60256 [+], 1143C4-dicarboxylate transporter/malic acid transport protein
72-60265..60867 [-], 603IS1415 transposase istA/B
73-60867..61412 [-], 546inorganic pyrophosphatase
74-61528..62811 [-], 1284enolase
75-62885..63226 [-], 342hypothetical protein
76-63321..63587 [-], 267hypothetical protein
77-63630..63953 [-], 324hypothetical protein
78-64034..64171 [-], 138hypothetical protein
79-64163..64294 [+], 132hypothetical protein
80-64396..65754 [-], 1359chloride channel protein
81-65991..66314 [-], 324hypothetical protein
82-66325..67068 [-], 744arsenical-resistance protein ACR3
83-67160..67594 [+], 435transcriptional regulator MerR family
84-67744..67860 [+], 117hypothetical protein
85-68028..68252 [-], 225hypothetical protein
86-68565..68810 [+], 246hypothetical protein
87-68936..70555 [-], 1620methyl-accepting chemotaxis protein I
88-70802..71293 [+], 492hypothetical protein
89-71290..72249 [+], 960tyrosine recombinase XerC
90-72347..72694 [-], 348hypothetical protein
91-72647..72820 [+], 174hypothetical protein
92-72777..72956 [+], 180hypothetical protein
93-72920..73276 [-], 357hypothetical protein
94-73287..73607 [-], 321hypothetical protein
95-73607..73885 [-], 279hypothetical protein
96-73902..74177 [-], 276hypothetical protein
97-74251..74475 [-], 225hypothetical protein
98-74492..74650 [-], 159hypothetical protein
99-74651..75091 [-], 441conjugative transfer protein PilM
100-75122..76489 [-], 1368conjugative transfer pilus-tip adhesin protein PilV
101-76486..77418 [-], 933conjugative transfer ATPase PilUTraJ_I, T4SS component 
102-77421..77942 [-], 522conjugative transfer protein PilS
103-77980..79071 [-], 1092conjugative transfer protein PilR
104-79061..80686 [-], 1626bundle-forming pilus protein BfpDDotB, T4SS component 
105-80683..81234 [-], 552conjugative transfer protein PilP
106-81275..82633 [-], 1359conjugative transfer protein PilO
107-82635..84368 [-], 1734conjugative transfer protein PilN
108-84371..85513 [-], 1143conjugative transfer protein PilLTfc2, T4SS component 
109-85749..85997 [-], 249hypothetical protein
110-86096..88048 [-], 1953DNA/RNA helicase
111-88061..88414 [-], 354hypothetical protein
112-88482..88664 [+], 183hypothetical protein
113-88766..88966 [-], 201hypothetical protein
114-89101..89343 [-], 243hypothetical protein
115-89529..89978 [-], 450single-stranded DNA-binding protein
116-89980..90552 [-], 573integrase regulator R
117-90552..91331 [-], 780hypothetical protein
118-91324..91836 [-], 513haemin uptake system outer membrane receptor
119-91839..93209 [-], 1371hypothetical protein
120-93209..93946 [-], 738hypothetical protein
121-93983..95746 [-], 1764protein with parB-like nuclease domain
122-95749..95994 [-], 246alginate biosynthesis transcriptional activator
123-96001..96246 [-], 246hypothetical protein
124-96243..96644 [-], 402hypothetical protein
125-96646..96987 [-], 342hypothetical protein
126-96984..98330 [-], 1347replicative DNA helicase
127-98330..99028 [-], 699hypothetical protein
128-99025..99780 [-], 756hypothetical protein
129-99782..100642 [-], 861parA-like chromosome partitioning ATPase
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins129Fasta
(1) Butler MI; Stockwell PA; Black MA; Day RC; Lamont IL; Poulter RT (2013). Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLoS One. 8(2):e57464. [PubMed:23555547] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU