ICEberg
I. Information of ICE
ICEberg ID1071
Name ICEVpaCan1 This is a predicted ICE derived from literature
OrganismVibrio parahaemolyticus S107-1
Size (bp)81492
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP028481 (complete ICE sequence in this genome)
Replicon-
Genome coordinates2625296..2706787 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEVpaCan1 is not available.



The graph information of ICEVpaCan1 components from CP028481
Complete gene list of ICEVpaCan1 from CP028481
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1DA442_134202620920..2622203 [-], 1284NupC/NupG family nucleoside CNT transporter
2DA442_134252622408..2623181 [-], 774TatD family deoxyribonuclease
3DA442_134302623134..2623355 [+], 222hypothetical protein
4prfC2623450..2625039 [-], 1590peptide chain release factor 3
5DA442_134402625296..2625943 [-], 648transcriptional regulator
6DA442_134452626061..2626312 [+], 252Cro/Cl family transcriptional regulator
7DA442_134502626368..2627237 [+], 870hypothetical protein
8DA442_134552627224..2627886 [+], 663hypothetical protein
9DA442_134602627873..2628421 [+], 549lytic transglycosylase domain-containing protein
10DA442_134652628418..2628720 [+], 303transcriptional regulator
11DA442_134702628713..2629246 [+], 534transcriptional regulator
12DA442_134752629301..2629732 [+], 432hypothetical protein
13DA442_134802629763..2633332 [-], 3570conjugal transfer protein TraG
14DA442_134852633336..2634724 [-], 1389conjugal transfer protein TraH
15DA442_134952635988..2636908 [-], 921IS5 family transposase
16DA442_135002637042..2638589 [-], 1548chemotaxis protein
17DA442_135102639717..2640424 [-], 708hypothetical protein
18DA442_135202641671..2642012 [-], 342plasmid-related protein
19DA442_135252642012..2642509 [-], 498DNA repair protein RadC
20DA442_135302642593..2644230 [-], 1638hypothetical protein
21DA442_135352644300..2644740 [-], 441hypothetical protein
22DA442_135402644802..2645755 [-], 954DUF3150 domain-containing protein
23DA442_135452645854..2646621 [-], 768hypothetical protein
24DA442_135502646621..2647580 [-], 960CbbQ/NirQ/NorQ/GpvN family protein
25DA442_135552647790..2648806 [-], 1017endonuclease
26bet2649091..2649909 [-], 819phage recombination protein Bet
27DA442_135652649989..2650408 [-], 420single-stranded DNA-binding protein
28DA442_135702650424..2650750 [-], 327plasmid-related protein
29DA442_135752651118..2651720 [+], 603hypothetical protein
30DA442_135802651931..2652254 [+], 324XRE family transcriptional regulator
31DA442_135852652248..2653564 [+], 1317toxin HipA
32DA442_135902653672..2657364 [-], 3693conjugal transfer protein TraN
33DA442_135952657367..2658395 [-], 1029conjugal transfer protein TraU
34DA442_136002658379..2659503 [-], 1125pilus assembly protein
35DA442_136052659514..2659933 [-], 420S26 family signal peptidase
36DA442_136102660010..2660357 [-], 348plasmid-related protein
37traC2660350..2662749 [-], 2400type IV secretion system protein TraC
38DA442_136202662749..2663441 [-], 693disulfide isomerase
39DA442_136252663768..2664721 [+], 954hypothetical protein
40DA442_136302665149..2665685 [+], 537hypothetical protein
41DA442_136352665840..2666106 [+], 267DUF1778 domain-containing protein
42DA442_136402666097..2666603 [+], 507N-acetyltransferase
43DA442_136452666644..2667030 [-], 387hypothetical protein
44traV2667027..2667677 [-], 651type IV conjugative transfer system protein TraV
45DA442_136552667674..2668963 [-], 1290conjugal transfer protein TraB
46DA442_136602668966..2669862 [-], 897hypothetical protein
47DA442_136652669846..2670472 [-], 627pilus assembly protein
48traL2670469..2670750 [-], 282type IV conjugative transfer system protein TraL
49higA2670984..2671274 [+], 291addiction module antidote protein, HigA family
50DA442_136802671476..2672582 [-], 1107DUF4172 domain-containing protein
51DA442_136852672736..2673371 [-], 636conjugal transfer protein
52DA442_136902673358..2673918 [-], 561conjugative transfer protein
53DA442_136952673928..2675748 [-], 1821conjugal transfer protein
54DA442_137002675796..2677946 [-], 2151phosphohydrolase
55DA442_137052678101..2680752 [-], 2652DNA repair protein
56brxL2680796..2682871 [-], 2076BREX system Lon protease-like protein BrxL
57pglZ2682888..2685545 [-], 2658BREX-1 system phosphatase PglZ type A
58pglX2685545..2689183 [-], 3639BREX-1 system adenine-specific DNA-methyltransferase PglX
59DA442_137252689187..2689945 [-], 759hypothetical protein
60DA442_137302689942..2691111 [-], 1170chromosome segregation protein SMC
61brxC2691122..2694799 [-], 3678BREX system P-loop protein BrxC
62DA442_137402694818..2695402 [-], 585DUF1788 domain-containing protein
63DA442_137452695399..2695998 [-], 600DUF1819 domain-containing protein
64DA442_137502696008..2696895 [-], 888WYL domain-containing protein
65DA442_137552697003..2697317 [-], 315hypothetical protein
66DA442_137602697391..2698299 [-], 909DNA polymerase III subunit epsilon
67DA442_137652698682..2698939 [-], 258hypothetical protein
68DA442_137702698938..2699387 [+], 450UV protection and mutation protein
69DA442_137752699395..2700663 [+], 1269DNA polymerase V subunit UmuC
70DA442_137802700674..2701117 [-], 444hypothetical protein
71DA442_137902702558..2702827 [+], 270hypothetical protein
72DA442_137952702829..2704070 [+], 1242integrase
73DA442_138002704082..2704276 [-], 195DNA-binding protein
74DA442_138052704502..2705716 [-], 1215kinase
75DA442_138102705709..2706020 [-], 312XRE family transcriptional regulator
76DA442_138152706787..2706879 [-], 93peptide chain release factor 3
77rimI2707001..2707456 [-], 456ribosomal-protein-alanine N-acetyltransferase
78DA442_138252707522..2707920 [-], 399DNA polymerase III subunit psi
79DA442_138302707972..2708421 [+], 450hypothetical protein
80DA442_138352708489..2708992 [-], 504N-acetyltransferase
81DA442_138402708976..2709509 [-], 534SCP2 domain-containing protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins71Fasta
(1) Bioteau A; Durand R; Burrus V (2018). Redefinition and unification of the SXT/R391 family of integrative and conjugative elements. Appl Environ Microbiol. . [PubMed:29654185]
 

Genomics & Bioinformatics Group in MML, SJTU