 ICEberg ID | 102 |
Name  | Tn5386  |
| ICEO ID | ICEO_0000178 |
| Organism | Enterococcus faecium D344R |
| Size (bp) | 29172 |
| GC content [Genome] (%) | 39.98 |
| Insertion site | - |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | DQ321786 (complete ICE sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 67..29238 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 7301..8422; Family: MOBT |
The graph information of Tn5386 components from DQ321786 | |||||
 | |||||
| Complete gene list of Tn5386 from DQ321786 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | - | 281..3340 [+], 3060 | hypothetical protein | ||
| 2 | - | 3574..3900 [+], 327 | hypothetical protein | ||
| 3 | - | 3915..4298 [+], 384 | hypothetical protein | ||
| 4 | - | 4501..5112 [+], 612 | hypothetical protein | ||
| 5 | - | 5180..6571 [+], 1392 | hypothetical protein | Orf21_Tn, T4SS component | |
| 6 | - | 6568..6972 [+], 405 | hypothetical protein | ||
| 7 | - | 7301..8422 [+], 1122 | hypothetical protein | Relaxase, MOBT Family | |
| 8 | - | 8429..8572 [+], 144 | hypothetical protein | ||
| 9 | - | 8569..8790 [+], 222 | hypothetical protein | Orf19_Tn, T4SS component | |
| 10 | - | 8875..9066 [+], 192 | hypothetical protein | ||
| 11 | - | 9188..9400 [+], 213 | hypothetical protein | ||
| 12 | - | 9397..9909 [+], 513 | hypothetical protein | ||
| 13 | - | 9909..10415 [+], 507 | hypothetical protein | ||
| 14 | - | 10579..10977 [+], 399 | hypothetical protein | Orf17_Tn, T4SS component | |
| 15 | - | 10955..16085 [+], 5131 | hypothetical protein | Orf16_Tn, T4SS component | |
| 16 | - | 13202..15028 [+], 1827 | hypothetical protein | ||
| 17 | - | 16085..18295 [+], 2211 | hypothetical protein | Orf15_Tn, T4SS component | |
| 18 | - | 18292..19299 [+], 1008 | hypothetical protein | Orf14_Tn, T4SS component | |
| 19 | - | 19317..20222 [+], 906 | hypothetical protein | Orf13_Tn, T4SS component | |
| 20 | - | 20377..21081 [+], 705 | hypothetical protein | ||
| 21 | - | 21074..21832 [+], 759 | hypothetical protein | ||
| 22 | - | 21834..22586 [+], 753 | hypothetical protein | ||
| 23 | - | 22599..23267 [+], 669 | hypothetical protein | ||
| 24 | - | 23249..24619 [+], 1371 | hypothetical protein | ||
| 25 | - | 24735..25046 [+], 312 | hypothetical protein | ||
| 26 | - | 25086..25454 [-], 369 | hypothetical protein | ||
| 27 | - | 25611..25835 [+], 225 | hypothetical protein | ||
| 28 | - | 25854..26219 [+], 366 | hypothetical protein | ||
| 29 | - | 26652..27080 [+], 429 | hypothetical protein | ||
| 30 | - | 27067..27315 [+], 249 | hypothetical protein | ||
| 31 | XisTn5386 | 27721..27927 [+], 207 | excisionase | ||
| 32 | IntTn5386 | 28008..29207 [+], 1200 | integrase | Integrase | |
 Gene may contribute to site-specific recombination |
|
(1) Rice LB; Carias LL; Hutton-Thomas R; Rudin S (2007). Interaction of related Tn916-like transposons: analysis of excision events promoted by Tn916 and Tn5386 integrases. J Bacteriol. 189(10):3909-17. [PubMed:17322310]
|
|
(2) Rice LB; Carias LL; Marshall S; Rudin SD; Hutton-Thomas R (2005). Tn5386, a novel Tn916-like mobile element in Enterococcus faecium D344R that interacts with Tn916 to yield a large genomic deletion. J Bacteriol. 187(19):6668-77. [PubMed:16166528]
|
| experimental literature |