 ICEberg ID | 1007 |
Name  | ICEMprChn1  |
| Organism | Marinomonas profundimaris D104 |
| Size (bp) | 86.4 kb |
| GC content [Genome] (%) | 46.9 |
| Insertion site | 5' end of an typical host prfC gene |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | AYOZ01000034; AYOZ01000017; AYOZ01000022; AYOZ01000004 (partial ICE sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of ICEMprChn1 components from AYOZ01000004 | |||||
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| Incomplete gene list of ICEMprChn1 from AYOZ01000004 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | D104_04160 | 102598..103614 [-], 1017 | endonuclease | ||
| 2 | D104_04165 | 103675..103818 [-], 144 | hypothetical protein | ||
| 3 | D104_04170 | 103900..104718 [-], 819 | recombinase | ||
| 4 | D104_04175 | 104798..105217 [-], 420 | single-stranded DNA-binding protein | ||
| 5 | D104_04180 | 105233..105559 [-], 327 | hypothetical protein | ||
| 6 | D104_04185 | 105927..106529 [+], 603 | hypothetical protein | ||
| 7 | D104_04190 | 106620..107282 [-], 663 | hypothetical protein | ||
| 8 | D104_04195 | 107313..107786 [-], 474 | hypothetical protein | ||
| 9 | D104_04200 | 107877..111569 [-], 3693 | conjugal transfer protein TraN | TraN_F, T4SS component | |
| 10 | D104_04205 | 111572..112600 [-], 1029 | conjugal transfer protein TraU | TraU_F, T4SS component | |
| 11 | D104_04210 | 112584..113711 [-], 1128 | type-F conjugative transfer system pilin assembly family protein | TraW_F, T4SS component | |
| 12 | D104_04215 | 113719..114231 [-], 513 | trsF | TraF, T4SS component | |
| 13 | D104_04220 | 114215..114562 [-], 348 | hypothetical protein | ||
| 14 | D104_04225 | 114555..116954 [-], 2400 | conjugal transfer protein TraC | TraC_F, T4SS component | |
| 15 | D104_04230 | 116954..117646 [-], 693 | disulfide isomerase | TrbB_I, T4SS component | |
The graph information of ICEMprChn1 components from AYOZ01000017 | |||||
 | |||||
| Incomplete gene list of ICEMprChn1 from AYOZ01000017 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | D104_09920 | 535..1440 [+], 906 | exonuclease | ||
| 2 | D104_09925 | 1654..1953 [+], 300 | hypothetical protein | ||
| 3 | D104_09930 | 2271..3206 [+], 936 | hypothetical protein | ||
| 4 | D104_09935 | 3244..6576 [+], 3333 | helicase | ||
| 5 | D104_09940 | 6580..7266 [+], 687 | hypothetical protein | ||
| 6 | D104_09945 | 7349..9295 [+], 1947 | DNA methyltransferase | ||
| 7 | D104_09950 | 9305..12382 [+], 3078 | type III restriction enzyme, res subunit | ||
| 8 | D104_09955 | 12456..13310 [+], 855 | restriction endonuclease | ||
| 9 | D104_09960 | 13405..15555 [+], 2151 | phosphohydrolase | Relaxase, MOBH Family | |
| 10 | D104_09965 | 15604..17424 [+], 1821 | traD | TraD_F, T4SS component | |
| 11 | D104_09970 | 17434..17994 [+], 561 | hypothetical protein | ||
| 12 | D104_09975 | 17981..18616 [+], 636 | conjugation coupling factor | ||
| 13 | D104_09980 | 18888..20444 [+], 1557 | integrase | Integrase | |
| 14 | D104_09985 | 20464..20559 [+], 96 | hypothetical protein | ||
| 15 | D104_09995 | 22159..22377 [+], 219 | threonine transporter | ||
| 16 | D104_10000 | 22409..22651 [+], 243 | hypothetical protein | ||
| 17 | D104_10005 | 22667..23374 [-], 708 | hypothetical protein | ||
| 18 | D104_10010 | 23443..23814 [-], 372 | hypothetical protein | ||
| 19 | D104_10015 | 23904..24596 [-], 693 | TetR family transcriptional regulator | ||
| 20 | D104_10020 | 24595..25641 [+], 1047 | RND transporter | ||
| 21 | D104_10025 | 25638..28679 [+], 3042 | multidrug transporter | ||
| 22 | D104_10030 | 28764..29378 [-], 615 | SAM-dependent methyltransferase | ||
| 23 | D104_10035 | 29590..29823 [+], 234 | hypothetical protein | ||
| 24 | D104_10040 | 30047..31351 [-], 1305 | transposase IS4 | ||
The graph information of ICEMprChn1 components from AYOZ01000022 | |||||
 | |||||
| Incomplete gene list of ICEMprChn1 from AYOZ01000022 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | D104_10445 | 1..1175 [+], 1175 | transposase | ||
| 2 | D104_10450 | 1251..1946 [+], 696 | ATPase AAA | ||
| 3 | D104_10455 | 2025..2597 [-], 573 | hypothetical protein | ||
| 4 | D104_10460 | 2886..3167 [+], 282 | conjugal transfer protein TraL | TraL_F, T4SS component | |
| 5 | D104_10465 | 3164..3790 [+], 627 | traE | TraE_F, T4SS component | |
| 6 | D104_10470 | 3771..4670 [+], 900 | traK family protein | TraK_F, T4SS component | |
| 7 | D104_10475 | 4673..5962 [+], 1290 | conjugal transfer protein TraB | TraB_F, T4SS component | |
| 8 | D104_10480 | 5959..6609 [+], 651 | conjugal transfer protein TraV | TraV_F, T4SS component | |
| 9 | D104_10485 | 6606..6992 [+], 387 | membrane protein | TraA_F, T4SS component | |
| 10 | D104_10490 | 7170..8003 [+], 834 | hypothetical protein | ||
| 11 | D104_10495 | 7996..8697 [+], 702 | hypothetical protein | ||
| 12 | D104_10500 | 8762..9169 [-], 408 | MerR family transcriptional regulator | ||
| 13 | D104_10505 | 9311..10195 [+], 885 | sodium:proton antiporter | ||
| (1) Ryan MP; Armshaw P; O'Halloran JA; Pembroke JT (2017). Analysis and comparative genomics of R997, the first SXT/R391 integrative and conjugative element (ICE) of the Indian Sub-Continent. Sci Rep. 7(1):8562. [PubMed:28819148] |
(2) Badhai J; Das SK (2016). Characterization of Three Novel SXT/R391 Integrating Conjugative Elements ICEMfuInd1a and ICEMfuInd1b, and ICEMprChn1 Identified in the Genomes of Marinomonas fungiae JCM 18476(T) and Marinomonas profundimaris Strain D104. Front Microbiol. 1.608333333. [PubMed:27933056] 
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| experimental literature |
| in silico analysis literature |