oriTfinder

oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements

Recommended Browser: Google Chrome.

(i) Query MGE genome

Upload a GenBank file containing one nucleotide sequence and annotation

or Upload a nucleotide sequence file in the FASTA format

(ii) Subject dataset

Conjugal transfer
Origin site of DNA transfer(oriT )	Relaxase
Type IV coupling protein (T4CP)	Type IV secretion system (T4SS)
Parameters (Optional) BLAST E-value HMMer E-value for Relaxase and T4CP detection
Accessory modules
Virulence Factors (VF)	Acquired Antibiotic Resistance Determinants (AR)
Parameters (Optional) BLASTp [Ha-value]