TADB

Browse by organism | type II or its classification | type I | type III | type IV | type V | type VI

At the heart of TADB is this ‘Browse by organism’ page that provides a hyperlinked organized catalog of over 900 prokaryotic genomes with TA systems identified. TADB provides an web-interface, allowing users to view an entire genome’s TA loci repertoire within the context of the whole replicon and to access individual pages dedicated to each TA locus pair, toxin and antitoxin as required.

Alphabet

Full list	Plasmid list	Chromosome list
Only TA-containing replicons are listed

#	Replicon	NCBI accession no.	TApair number
1	Lactobacillus acidophilus NCFM chromosome	NC_006814	4
2	Lactobacillus brevis ATCC 367 plasmid 1	NC_008498	1
3	Lactobacillus brevis ATCC 367 plasmid 2	NC_008499	1
4	Lactobacillus casei ATCC 334 (Lactobacillus paracasei ATCC 334) chromosome	NC_008526	2
5	Lactobacillus casei BL23 chromosome	NC_010999	8
6	Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 chromosome	NC_008054	1
7	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	NC_008529	3
8	Lactobacillus fermentum IFO 3956 chromosome	NC_010610	1
9	Lactobacillus gasseri ATCC 33323 chromosome	NC_008530	9
10	Lactobacillus helveticus DPC 4571 chromosome	NC_010080	4
11	Lactobacillus johnsonii NCC 533 chromosome	NC_005362	6
12	Lactobacillus plantarum plasmid pCD033 plasmid	KP718939	1
13	Lactobacillus plantarum WCFS1 chromosome	NC_004567	6
14	Lactobacillus reuteri DSM 20016 chromosome	NC_009513	4
15	Lactobacillus reuteri JCM 1112 chromosome	NC_010609	2
16	Lactobacillus rhamnosus ATCC 8530 chromosome	NC_017491	6
17	Lactobacillus rhamnosus GG chromosome	NC_013198	1
18	Lactobacillus rhamnosus GG chromosome	NC_017482	1
19	Lactobacillus rhamnosus Lc 705 chromosome	NC_013199	5
20	Lactobacillus sakei subsp. sakei 23K chromosome	NC_007576	1
21	Lactobacillus salivarius UCC118 chromosome	NC_007929	5
22	Lactobacillus salivarius UCC118 plasmid pSF118-20	NC_006529	1
23	Lactobacillus salivarius UCC118 plasmid pSF118-44	NC_006530	2
24	Lactococcus lactis plasmid pNP40, complete sequence.	NC_010901	1 [1 ]
25	Lactococcus lactis plasmid pSRQ900	AF001314	1 [1 ]
26	Lactococcus lactis subsp. cremoris MG1363 chromosome	NC_009004	5
27	Lactococcus lactis subsp. cremoris SK11 chromosome	NC_008527	3
28	Lactococcus lactis subsp. lactis Il1403 chromosome	NC_002662	5
29	Legionella pneumophila str. Corby chromosome	NC_009494	6
30	Legionella pneumophila str. Lens chromosome	NC_006369	8
31	Legionella pneumophila str. Lens plasmid pLPL	NC_006366	1
32	Legionella pneumophila str. Paris plasmid pLPP	NC_006365	2
33	Legionella pneumophila subsp. pneumophila str. Philadelphia 1	NC_002942	7
34	Leifsonia xyli subsp. xyli str. CTCB07 chromosome	NC_006087	2
35	Leptospira biflexa serovar Patoc strain Patoc 1 (Ames) chromosome	NC_010842	22
36	Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)	NC_010602	20
37	Leptospira biflexa serovar Patoc strain Patoc 1 (Paris) plasmid p74	NC_010844	1
38	Leptospira borgpetersenii serovar Hardjo-bovis str. JB197	NC_008510	7
39	Leptospira borgpetersenii serovar Hardjo-bovis str. L550 chromosome	NC_008508	7
40	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130	NC_005823	7
41	Leptospira interrogans serovar Lai str. 56601 chromosome	NC_004342	5
42	Leptothrix cholodnii SP-6 chromosome	NC_010524	16
43	Leuconostoc citreum KM20 chromosome	NC_010471	1
44	Leuconostoc citreum KM20 plasmid pLCK1	NC_010470	2
45	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	NC_008531	1
46	Listeria innocua Clip11262 chromosome	NC_003212	5
47	Listeria monocytogenes EGD-e chromosome	NC_003210	2
48	Listeria monocytogenes serotype 4b str. F2365 chromosome	NC_002973	1
49	Listeria welshimeri serovar 6b str. SLCC5334 chromosome	NC_008555	2
50	Lysinibacillus sphaericus C3-41 plasmid pBsph	NC_010381	1
Total			216 [2 ]
Number of TAs that are from experimental literatures

Genomics & Bioinformatics Group in MML, SJTU

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