SecReT4

T4SS
References

T4SS ID	244
Strain	Agrobacterium tumefaciens plasmid pTi-SAKURA (NC_002147)
Replicon	plasmid pTi-SAKURA [Browse all T4SS(s) in this replicon]
Accession	NC_002147
Location	7308..16975; 97732..104552
Name	Trb
Function	NA
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	1	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	1	1	0	1	1

The information of T4SS components from NC_002147
Region 1: 7308..16975

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pTi-SAKURA_p003 (tiorf2)	2594..3319 [-], 726	10954822	hypothetical protein
2	pTi-SAKURA_p004 (tiorf3)	3321..4031 [-], 711	10954823	hypothetical protein
3	pTi-SAKURA_p005 (tiorf4)	4106..4957 [-], 852	10954824	hypothetical protein
4	pTi-SAKURA_p006 (tiorf5)	5022..5795 [-], 774	10954825	hypothetical protein
5	pTi-SAKURA_p007 (tiorf6)	6016..6951 [+], 936	10954826	hypothetical protein
6	pTi-SAKURA_p008 (tiorf7)	7308..8624 [-], 1317	10954827	conjugal transfer protein TrbI	TrbI
7	pTi-SAKURA_p009 (tiorf8)	8637..9113 [-], 477	10954828	conjugal transfer protein TrbH	TrbH
8	pTi-SAKURA_p010 (tiorf9)	9113..9967 [-], 855	10954829	conjugal transfer protein TrbG	TrbG
9	pTi-SAKURA_p011 (tiorf10)	9985..10647 [-], 663	10954830	conjugal transfer protein TrbF	TrbF
10	pTi-SAKURA_p012 (tiorf11)	10662..11825 [-], 1164	10954831	conjugal transfer protein TrbL	TrbL
11	pTi-SAKURA_p013 (tiorf12)	11852..12070 [-], 219	10954832	hypothetical protein	TrbK
12	pTi-SAKURA_p014 (tiorf13)	12067..12870 [-], 804	10954833	conjugal transfer protein TrbJ	TrbJ
13	pTi-SAKURA_p015 (tiorf14)	12842..15310 [-], 2469	10954834	conjugal transfer protein TrbE	TrbE
14	pTi-SAKURA_p016 (tiorf15)	15321..15620 [-], 300	10954835	conjugal transfer protein TrbD	TrbD
15	pTi-SAKURA_p017 (tiorf16)	15613..16014 [-], 402	10954836	conjugal transfer protein TrbC	TrbC
16	pTi-SAKURA_p018 (tiorf17)	16004..16975 [-], 972	10954837	conjugal transfer protein TrbB	TrbB
17	pTi-SAKURA_p019 (tiorf18)	16972..17607 [-], 636	10954838	putative autoinducer synthesis protein
18	pTi-SAKURA_p020 (tiorf19)	17971..19188 [+], 1218	10954839	plasmid-partitioning protein RepA
19	pTi-SAKURA_p021 (tiorf20)	19418..20428 [+], 1011	10954840	plasmid partitioning protein RepB
20	pTi-SAKURA_p023 (tiorf21)	20643..21962 [+], 1320	10954841	replication initiation protein RepC

Region 2: 97732..104552

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pTi-SAKURA_p102 (tiorf100)	93812..94450 [+], 639	10954920	hypothetical protein
2	pTi-SAKURA_p103 (tiorf101)	94584..95198 [-], 615	10954921	hypothetical protein
3	pTi-SAKURA_p104 (tiorf102)	95500..95778 [-], 279	10954922	hypothetical protein
4	pTi-SAKURA_p105 (tiorf103)	95918..96175 [-], 258	10954923	hypothetical protein
5	pTi-SAKURA_p106 (tiorf104)	96606..96932 [+], 327	10954924	hypothetical protein
6	pTi-SAKURA_p107 (tiorf105)	97310..97711 [-], 402	10954925	hypothetical protein
7	pTi-SAKURA_p108 (tiorf106)	97732..99681 [-], 1950	10954926	conjugal transfer coupling protein TraG	TraG
8	pTi-SAKURA_p109 (tiorf107)	99668..99883 [-], 216	10954927	conjugal transfer protein TraD
9	pTi-SAKURA_p110 (tiorf108)	99888..100184 [-], 297	10954928	conjugal transfer protein TraC
10	pTi-SAKURA_p111 (tiorf109)	100441..104025 [+], 3585	10954929	hypothetical protein
11	pTi-SAKURA_p112 (tiorf110)	104022..104552 [+], 531	10954930	conjugal transfer pilin processing protease TraF	TraF
12	pTi-SAKURA_p113 (tiorf111)	104476..105723 [+], 1248	10954931	conjugal transfer protein TraB
13	pTi-SAKURA_p114 (tiorf112)	105737..106363 [+], 627	10954932	conjugal transfer protein TraH
14	pTi-SAKURA_p115 (tiorf113)	106888..107196 [+], 309	10954933	hypothetical protein
15	pTi-SAKURA_p116 (tiorf114)	107355..109079 [-], 1725	10954934	hypothetical protein
16	pTi-SAKURA_p117 (tiorf115)	109182..109511 [-], 330	10954935	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Suzuki K; Hattori Y; Uraji M; Ohta N; Iwata K; Murata K; Kato A; Yoshida K (2000). Complete nucleotide sequence of a plant tumor-inducing Ti plasmid. Gene. 242(1-2):331-6. [PudMed:10721727]

(2) Suzuki K; Hattori Y; Uraji M; Ohta N; Katoh A; Yoshida K (1997). Genome structure of pTi-SAKURA (II): genetic map constructed by complete DNA sequencing. Nucleic Acids Symp Ser. (37):161-2. [PudMed:9586049]

(3) Suzuki K; Ohta N; Hattori Y; Uraji M; Kato A; Yoshida K (1998). Novel structural difference between nopaline- and octopine-type trbJ genes: construction of genetic and physical map and sequencing of trb/traI and rep gene clusters of a new Ti plasmid pTi-SAKURA. Biochim Biophys Acta. 1396(1):1-7. [PudMed:9524202]