SecReT4
T4SS ID82
StrainSalmonella enterica subsp. enterica serovar Typhimurium plasmid pYT1 (NC_014476)
Repliconplasmid pYT1 [Browse all T4SS(s) in this replicon]
AccessionNC_014476
Location76009..109099
NameTra_F
FunctionNA
ClassificationType IVA; Type F
insolico This T4SS is identified in this study.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number111111111
ComponentTraY_FTrbC_FOrf169_F
Number112

The information of T4SS components from NC_014476
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pYT1_p07471168..73165 [+], 1998305696902putative ParB-like nuclease domain 
2pYT1_p075 (PsiB)73208..73639 [+], 432305696903Plasmid SOS inhibition 
3pYT1_p076 (PsiA)73636..74373 [+], 738305696904Plasmid SOS inhibition 
4pYT1_p07776009..76572 [-], 564305696905putative transglycosylase  Orf169_F
5pYT1_p078 (finP)76009..76479 [-], 471305696906putative transglycosylase  Orf169_F
6pYT1_p079 (TraM)76894..77274 [+], 381305696907conjugative transfer protein  TraM_F
7pYT1_p080 (TraJ)77467..78153 [+], 687305696908conjugative transfer regulatory protein 
8pYT1_p081 (TraY)78154..78474 [+], 321305696909conjugative transfer oriT nicking protein  TraY_F
9pYT1_p082 (TraA)78516..78878 [+], 363305696910conjugative transfer fimbrial subunit  TraA_F
10pYT1_p083 (TraL)78893..79204 [+], 312305696911conjugal transfer pilus assembly protein  TraL_F
11pYT1_p084 (TraE)79226..79792 [+], 567305696912conjugative transfer assembly protein  TraE_F
12pYT1_p085 (TraK)79779..80519 [+], 741305696913conjugative transfer assembly protein  TraK_F
13pYT1_p086 (TraB)80519..81940 [+], 1422305696914conjugative transfer assembly protein  TraB_F
14pYT1_p087 (TraP)81930..82526 [+], 597305696915conjugative transfer protein 
15pYT1_p088 (TrbD)82513..82749 [+], 237305696916conjugative transfer protein 
16pYT1_p089 (TraV)82746..83261 [+], 516305696917conjugative transfer assembly protein  TraV_F
17pYT1_p090 (TraR)83396..83617 [+], 222305696918conjugative transfer protein 
18pYT1_p09183610..84077 [+], 468305696919conjugative transfer protein 
19pYT1_p09284194..84457 [+], 264305696920putative inner membrane protein 
20pYT1_p093 (TraC)84473..87121 [+], 2649305696921conjugative transfer assembly protein  TraC_F
21pYT1_p094 (TrbI)87096..87482 [+], 387305696922conjugative transfer protein 
22pYT1_p095 (TraW)87479..88111 [+], 633305696923conjugative transfer assembly protein  TraW_F
23pYT1_p096 (TraU)88108..89100 [+], 993305696924conjugative transfer assembly protein  TraU_F
24pYT1_p09789119..89427 [+], 309305696925conjugative transfer protein 
25pYT1_p098 (TrbC)89412..90050 [+], 639305696926conjugative transfer assembly protein  TrbC_F
26pYT1_p09990087..90506 [+], 420305696927putative HNH endonuclease 
27pYT1_p100 (TraN)90503..92329 [+], 1827305696928conjugative transfer aggregate stability protein  TraN_F
28pYT1_p101 (TrbE)92340..92555 [+], 216305696929conjugative transfer protein 
29pYT1_p102 (TraF)92564..93316 [+], 753305696930conjugative transfer assembly protein  TraF_F
30pYT1_p103 (TraQ)93530..93823 [+], 294305696931conjugative transfer pilin chaperone protein  TraQ_F
31pYT1_p104 (TrbB)93810..94358 [+], 549305696932conjugative transfer protein 
32pYT1_p105 (TraH)94348..95730 [+], 1383305696933trah pilus assembly protein trah  TraH_F
33pYT1_p106 (TraG)95727..98549 [+], 2823305696934conjugative transfe: assembly and aggregate stability protein  TraG_F
34pYT1_p107 (traS)98571..99059 [+], 489305696935conjugative transfer surface exclusion protein 
35pYT1_p108 (TraT)99095..99826 [+], 732305696936conjugative transfer surface exclusion protein 
36pYT1_p109 (TraD)100203..102365 [+], 2163305696937conjugative transfer DNA transport protein  TraD_F
37pYT1_p110 (TrbH)102365..103084 [+], 720305696938conjugative transfer protein 
38pYT1_p111 (TraI)103081..108339 [+], 5259305696939conjugative transfer oriT nicking-unwinding protein  TraI_F
39pYT1_p112107418..108380 [-], 963305696940hypothetical protein 
40pYT1_p113108131..108763 [-], 633305696941hypothetical protein 
41pYT1_p114 (TraX)108359..109099 [+], 741305696942conjugative transfer fimbrial acetylation protein  TraX_F
42pYT1_p115 (FinO)109154..109717 [+], 564305696943conjugative transfer regulatory protein 
43pYT1_p116109832..110116 [+], 285305696944hypothetical protein 
44pYT1_p117110450..110710 [+], 261305696945putative phospholipase D 
45pYT1_p118 (RepB)111092..111337 [+], 246305696946DNA replication 
46pYT1_p119 (RepA)111645..112526 [+], 882305696947DNA replication 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_014476

Genomics & Bioinformatics Group in MML, SJTU