SecReT4

T4SS
References

T4SS ID	761
Strain	Pseudomonas syringae pv. tomato str. DC3000
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_004578
Location	916412..953524
Name	Tfc
Function	NA
Classification	Type IVC; Type G
This T4SS is identified in this study.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	0	0	0	0	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	1	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	0	0	0	1	1	1

The information of T4SS components from NC_004578

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	PSPTO_RS04465 (tnpB)	911780..912136 [+], 357	1167802287	IS66 family insertion sequence element accessory protein TnpB
2	PSPTO_RS04470	912397..913374 [-], 978	494457842	IS5-like element ISPssy family transposase
3	PSPTO_RS04475	913394..914899 [+], 1506	1818936128	IS66 family transposase
4	PSPTO_RS04480	914944..916050 [-], 1107	pseudogene	conjugal transfer protein TraG
5	PSPTO_RS04485	916047..916415 [-], 369	499415840	hypothetical protein
6	PSPTO_RS04490	916412..917809 [-], 1398	639475434	integrating conjugative element protein
7	PSPTO_RS04495	917806..918744 [-], 939	499415842	TIGR03756 family integrating conjugative element protein	Tfc23
8	PSPTO_RS04500	918744..919202 [-], 459	815831226	TIGR03757 family integrating conjugative element protein
9	PSPTO_RS04505	919701..920189 [-], 489	499415844	DUF1440 domain-containing protein
10	PSPTO_RS04510	920451..921692 [-], 1242	499415845	lytic murein transglycosylase
11	PSPTO_RS04515	923360..923584 [+], 225	499415846	carbon storage regulator
12	PSPTO_RS04520	923620..924033 [+], 414	499415847	TraR/DksA family transcriptional regulator
13	PSPTO_RS04525	924071..924292 [+], 222	499415848	hypothetical protein
14	PSPTO_RS04530	924851..925042 [+], 192	489442282	hypothetical protein
15	PSPTO_RS04535	925113..925604 [+], 492	489442283	GNAT family N-acetyltransferase
16	PSPTO_RS04540	925982..927079 [+], 1098	489442284	AAA family ATPase
17	PSPTO_RS04545	927082..927900 [+], 819	499415849	RelA/SpoT domain-containing protein
18	PSPTO_RS04550	928074..928778 [-], 705	499415850	DsbA family protein
19	PSPTO_RS04555	928775..929074 [-], 300	499415851	hypothetical protein
20	PSPTO_RS04560	929071..932028 [-], 2958	492171029	conjugative transfer ATPase
21	PSPTO_RS04565	932028..932483 [-], 456	492077662	TIGR03751 family conjugal transfer lipoprotein	Tfc15
22	PSPTO_RS04570	932461..933957 [-], 1497	492171032	TIGR03752 family integrating conjugative element protein	Tfc14
23	PSPTO_RS04575	933947..934870 [-], 924	492171034	TIGR03749 family integrating conjugative element protein	Tfc13
24	PSPTO_RS04580	934867..935535 [-], 669	489413167	TIGR03746 family integrating conjugative element protein	Tfc12
25	PSPTO_RS04585	935532..935612 [-], 81	pseudogene	TIGR03750 family conjugal transfer protein
26	PSPTO_RS04590	935655..936464 [-], 810	492079392	IS21-like element ISPsy4 family helper ATPase IstB
27	PSPTO_RS04595	936461..937483 [-], 1023	488614473	IS21-like element ISPsy4 family transposase
28	PSPTO_RS04600	937527..937892 [-], 366	499415853	TIGR03750 family conjugal transfer protein	Tfc11
29	PSPTO_RS04605	937908..938276 [-], 369	492171039	TIGR03745 family integrating conjugative element membrane protein	Tfc10
30	PSPTO_RS04610	938296..938535 [-], 240	490800596	TIGR03758 family integrating conjugative element protein
31	PSPTO_RS04615	938532..938897 [-], 366	499415855	RAQPRD family integrative conjugative element protein	Tfc9
32	PSPTO_RS29845	938977..939307 [-], 331	pseudogene	DUF4177 domain-containing protein
33	PSPTO_RS04620	939779..941068 [+], 1290	492171044	MFS transporter
34	PSPTO_RS04625	941204..941721 [+], 518	pseudogene	transposase
35	PSPTO_RS04630	942019..943119 [+], 1101	491814609	amidinotransferase
36	PSPTO_RS04635	943206..944459 [+], 1254	492171049	HPr kinase
37	PSPTO_RS04640	944512..945756 [+], 1245	492171052	HPr kinase
38	PSPTO_RS04645	946807..948339 [+], 1533	757683253	hypothetical protein
39	PSPTO_RS04650	948455..949678 [-], 1224	492172327	type III secretion system effector protein
40	PSPTO_RS04655	949898..950149 [+], 252	494457976	hypothetical protein
41	PSPTO_RS04660	950387..951844 [-], 1458	492172329	ATP-dependent helicase
42	PSPTO_RS04665	951854..952603 [-], 750	494462005	TIGR03747 family integrating conjugative element membrane protein	Tfc8
43	PSPTO_RS04670	952643..953491 [-], 849	pseudogene	TraM recognition domain-containing protein
44	PSPTO_RS04675	953552..954085 [-], 534	492172343	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_004578