T4SS ID	743
Strain	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_004631
Location	4408518..4442747
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	0	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_004631
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	t4235	4406040..4406489 [+], 450	29144495	hypothetical protein
2	t4236	4406570..4406788 [+], 219	29144496	hypothetical protein
3	t4237 (ssb)	4406801..4407337 [+], 537	29144497	single-stranded DNA-binding protein
4	t4239 (pilL)	4408518..4409762 [+], 1245	29144498	hypothetical protein	Tfc2
5	t4240 (pilM)	4409765..4410184 [+], 420	29144499	hypothetical protein
6	t4243 (pilO)	4411887..4413182 [+], 1296	29144500	pilus assembly protein
7	t4244 (pilP)	4413280..4413750 [+], 471	29144501	pilus assembly protein
8	t4245 (pilQ)	4413760..4415475 [+], 1716	29144502	nucleotide-binding protein
9	t4246 (pilR)	4415472..4416557 [+], 1086	29144503	hypothetical protein
10	t4247 (pilS)	4416557..4417192 [+], 636	29144504	prepilin
11	t4248 (pilT)	4417202..4417678 [+], 477	29144505	hypothetical protein
12	t4249 (pilU)	4417675..4418337 [+], 663	29144506	prepilin peptidase
13	t4250 (pilV)	4418334..4419641 [+], 1308	29144507	prepilin
14	t4252 (rci)	4419989..4421140 [+], 1152	29144508	shufflon-specific DNA recombinase
15	t4253 (pilK)	4421237..4421704 [+], 468	29144509	hypothetical protein
16	t4254	4421916..4422791 [+], 876	29144510	hypothetical protein
17	t4255	4423298..4424212 [+], 915	29144511	hypothetical protein
18	t4256	4424231..4424971 [+], 741	29144512	hypothetical protein	Tfc3
19	t4257	4425085..4425636 [+], 552	29144513	hypothetical protein	Tfc4
20	t4258	4425672..4426172 [+], 501	29144514	hypothetical protein	Tfc5
21	t4259	4426182..4426751 [+], 570	29144515	hypothetical protein
22	t4260	4426771..4428861 [+], 2091	29144516	hypothetical protein	Tfc6
23	t4261	4428858..4429616 [+], 759	29144517	hypothetical protein	Tfc8
24	t4262	4429835..4430107 [+], 273	29144518	hypothetical protein	Tfc9
25	t4263	4430107..4430346 [+], 240	29144519	hypothetical protein
26	t4264	4430376..4430738 [+], 363	29144520	hypothetical protein
27	t4265	4431119..4431772 [+], 654	29144521	hypothetical protein	Tfc12
28	t4266	4431772..4432671 [+], 900	29144522	hypothetical protein	Tfc13
29	t4268	4432661..4434139 [+], 1479	29144523	hypothetical protein	Tfc14
30	t4267	4434132..4434575 [+], 444	29144524	lipoprotein	Tfc15
31	t4269	4434572..4434991 [+], 420	29144525	hypothetical protein
32	t4270	4434988..4437411 [+], 2424	29144526	hypothetical protein	Tfc16
33	t4271	4437566..4437952 [+], 387	29144527	hypothetical protein
34	t4272	4438107..4438499 [+], 393	29144528	hypothetical protein	Tfc24
35	t4273	4438496..4439464 [+], 969	29144529	hypothetical protein	Tfc23
36	t4274	4439479..4440909 [+], 1431	29144530	hypothetical protein	Tfc22
37	t4275	4440906..4441238 [+], 333	29144531	hypothetical protein
38	t4276	4441242..4442747 [+], 1506	29144532	hypothetical protein	Tfc19
39	t4277	4442986..4444233 [+], 1248	29144533	hypothetical protein
40	t4278	4444245..4444859 [+], 615	29144534	hypothetical protein
41	t4279	4445070..4445612 [-], 543	29144535	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICESenTy2-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation