T4SS ID	685
Strain	Yersinia pseudotuberculosis IP 31758
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_009708
Location	4172940..4212300
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
This T4SS is identified in this study.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	1	0	1	1	1

The information of T4SS components from NC_009708
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	YPSIP31758_RS19840	4167963..4168580 [+], 618	501054256	hypothetical protein
2	YPSIP31758_RS19845	4168820..4169257 [+], 438	501054257	hypothetical protein
3	YPSIP31758_RS19850	4169387..4169941 [+], 555	501054258	RHS repeat-associated core domain-containing protein
4	YPSIP31758_RS19855	4169957..4170577 [+], 621	752489776	hypothetical protein
5	YPSIP31758_RS19860	4170921..4171811 [-], 891	501054260	integrase domain-containing protein
6	YPSIP31758_RS19865	4172940..4173236 [+], 297	501054261	hypothetical protein	Tfc20
7	YPSIP31758_RS19870	4173268..4174791 [-], 1524	501054262	conjugal transfer protein TraG	Tfc19
8	YPSIP31758_RS19875	4174791..4176197 [-], 1407	501054263	integrating conjugative element protein	Tfc22
9	YPSIP31758_RS19880	4176218..4177171 [-], 954	501054264	TIGR03756 family integrating conjugative element protein	Tfc23
10	YPSIP31758_RS19885	4177168..4177572 [-], 405	501054265	TIGR03757 family integrating conjugative element protein	Tfc24
11	YPSIP31758_RS19890	4178255..4180441 [+], 2187	752489777	AAA family ATPase
12	YPSIP31758_RS19895	4181327..4182028 [+], 702	501054267	toll/interleukin-1 receptor domain-containing protein
13	YPSIP31758_RS19900	4182460..4185306 [-], 2847	501054268	conjugative transfer ATPase	Tfc16
14	YPSIP31758_RS19905	4185306..4185710 [-], 405	1567770467	TIGR03751 family conjugal transfer lipoprotein
15	YPSIP31758_RS19910	4185720..4187237 [-], 1518	501054270	TIGR03752 family integrating conjugative element protein	Tfc14
16	YPSIP31758_RS19915	4187234..4188067 [-], 834	752489876	TIGR03749 family integrating conjugative element protein
17	YPSIP31758_RS19920	4188097..4188750 [-], 654	501054274	TIGR03746 family integrating conjugative element protein	Tfc12
18	YPSIP31758_RS19925	4188747..4189121 [-], 375	501054276	TIGR03750 family conjugal transfer protein	Tfc11
19	YPSIP31758_RS24120	4189131..4189481 [-], 351	501054277	TIGR03745 family integrating conjugative element membrane protein
20	YPSIP31758_RS24125	4189497..4189736 [-], 240	1847706190	TIGR03758 family integrating conjugative element protein
21	YPSIP31758_RS19940	4189742..4190050 [-], 309	501054279	RAQPRD family integrative conjugative element protein	Tfc9
22	YPSIP31758_RS19945	4190571..4191458 [-], 888	501054280	DUF2971 domain-containing protein
23	YPSIP31758_RS19950	4191576..4193381 [-], 1806	501054281	ATP-binding protein
24	YPSIP31758_RS19955	4193378..4194616 [-], 1239	501054282	SIR2 family protein
25	YPSIP31758_RS19960	4194737..4195489 [-], 753	501054283	TIGR03747 family integrating conjugative element membrane protein	Tfc8
26	YPSIP31758_RS19965 (traD)	4195489..4197609 [-], 2121	501054284	type IV conjugative transfer system coupling protein TraD	Tfc6
27	YPSIP31758_RS19970	4197668..4198162 [-], 495	752489877	integrating conjugative element protein
28	YPSIP31758_RS19975	4198186..4198734 [-], 549	1194714867	transglycosylase SLT domain-containing protein
29	YPSIP31758_RS19980	4198803..4199570 [-], 768	908574478	TIGR03759 family integrating conjugative element protein
30	YPSIP31758_RS19985	4199713..4200045 [-], 333	501054288	hypothetical protein
31	YPSIP31758_RS19990	4200035..4200241 [-], 207	501054289	hypothetical protein
32	YPSIP31758_RS19995	4200453..4200809 [+], 357	501054290	helix-turn-helix transcriptional regulator
33	YPSIP31758_RS20000	4201125..4202057 [-], 933	501054292	Rpn family recombination-promoting nuclease/putative transposase
34	YPSIP31758_RS20005 (pilV)	4202151..4203428 [-], 1278	501054293	shufflon system plasmid conjugative transfer pilus tip adhesin PilV
35	YPSIP31758_RS20010	4203432..4204100 [-], 669	501054294	prepilin peptidase
36	YPSIP31758_RS20015	4204097..4204684 [-], 588	501054295	type IV prepilin
37	YPSIP31758_RS20020	4204699..4205808 [-], 1110	752489779	type II secretion system F family protein
38	YPSIP31758_RS20025 (tadA)	4205801..4207354 [-], 1554	501054297	Flp pilus assembly complex ATPase component TadA
39	YPSIP31758_RS20030 (pilP)	4207364..4207858 [-], 495	501054298	type IV pilus biogenesis protein PilP
40	YPSIP31758_RS20035 (pilO2)	4207845..4209182 [-], 1338	501054299	type 4b pilus protein PilO2
41	YPSIP31758_RS20040	4209185..4210777 [-], 1593	501054300	PilN family type IVB pilus formation outer membrane protein
42	YPSIP31758_RS20045 (pilM)	4210791..4211228 [-], 438	501054301	type IV pilus biogenesis protein PilM
43	YPSIP31758_RS20050	4211230..4212300 [-], 1071	501054302	TcpQ domain-containing protein	Tfc2
44	YPSIP31758_RS20055	4212438..4212824 [-], 387	501054303	type II toxin-antitoxin system VapC family toxin
45	YPSIP31758_RS20060	4212821..4213054 [-], 234	501054304	type II toxin-antitoxin system prevent-host-death family antitoxin
46	YPSIP31758_RS20065	4213225..4213656 [-], 432	501054305	DUF29 domain-containing protein
47	YPSIP31758_RS20070	4213859..4214353 [-], 495	880925348	DUF3577 domain-containing protein
48	YPSIP31758_RS20075	4214702..4215460 [-], 759	501054308	TIGR03761 family integrating conjugative element protein
49	YPSIP31758_RS20080	4215620..4216819 [-], 1200	501054309	helix-turn-helix domain-containing protein
50	YPSIP31758_RS20085	4217055..4217285 [-], 231	742321103	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) YAPI(IP32777) and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

Identified as part of this study from NC_009708