SecReT4

T4SS
References

T4SS ID	590
Strain	Photobacterium damselae subsp. piscicida plasmid pP99-018 (NC_008612)
Replicon	plasmid pP99-018 [Browse all T4SS(s) in this replicon]
Accession	NC_008612
Location	32858..61024; 106276..114299
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_008612
Region 1: 32858..61024

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	P99018ORF_044	27943..28560 [+], 618	118614672	hypothetical protein
2	P99018ORF_045	28772..29071 [+], 300	118614673	hypothetical protein
3	P99018ORF_046	29163..29651 [-], 489	118614674	hypothetical protein
4	P99018ORF_047	29666..31858 [-], 2193	118614675	DNA topoisomerase III
5	P99018ORF_048	31858..32019 [-], 162	118614676	hypothetical protein
6	P99018ORF_049	32073..32705 [-], 633	118614677	hypothetical protein
7	P99018ORF_050	32858..35836 [+], 2979	118614678	conjugative relaxase	TraI_F
8	P99018ORF_051	35839..37698 [+], 1860	118614679	conjugative coupling factor	TraD_F
9	P99018ORF_052	37709..38293 [+], 585	118614680	hypothetical protein
10	P99018ORF_053	38250..38879 [+], 630	118614681	putative conjugation coupling factor
11	P99018ORF_054	38889..39335 [+], 447	118614682	hypothetical protein
12	P99018ORF_055	39345..39722 [+], 378	118614683	hypothetical protein
13	P99018ORF_056	39722..40384 [+], 663	118614684	hypothetical protein
14	P99018ORF_057	40708..41085 [+], 378	118614685	hypothetical protein
15	P99018ORF_058	41230..41511 [+], 282	118614686	sex pilus assembly protein	TraL_F
16	P99018ORF_059	41508..42134 [+], 627	118614687	sex pilus aseembly protein	TraE_F
17	P99018ORF_060	42118..43035 [+], 918	118614688	hypothetical protein	TraK_F
18	P99018ORF_061	43032..44348 [+], 1317	118614689	sex pilus assembly protein	TraB_F
19	P99018ORF_062	44345..44923 [+], 579	118614690	sex pilus assmbly protein	TraV_F
20	P99018ORF_063	44936..45319 [+], 384	118614691	hypothetical protein	TraA_F
21	P99018ORF_064	45508..51051 [+], 5544	118614692	hypothetical protein
22	P99018ORF_065	51200..51907 [+], 708	118614693	sidufide bond isomerase
23	P99018ORF_066	51904..54351 [+], 2448	118614694	sex pilus assembly protein	TraC_F
24	P99018ORF_067	54366..54683 [+], 318	118614695	hypothetical protein
25	P99018ORF_068	54680..55210 [+], 531	118614696	conjugation signal peptide
26	P99018ORF_069	55221..56438 [+], 1218	118614697	pilus assembly protein	TraW_F
27	P99018ORF_070	56435..57106 [+], 672	118614698	hypothrtical protien
28	P99018ORF_071	57103..58110 [+], 1008	118614699	sex pilus assembly protein	TraU_F
29	P99018ORF_072	58214..61024 [+], 2811	118614700	conjugal transfer mating pair stabilization protein TraN	TraN_F
30	P99018ORF_073	61063..61923 [-], 861	118614701	hypothetical protein
31	P99018ORF_074	62046..62687 [-], 642	118614702	hypothetical protein
32	P99018ORF_075	62981..63301 [+], 321	118614703	hypothetical protein
33	P99018ORF_076	63539..63790 [+], 252	118614704	hypothetical protein
34	P99018ORF_077	64010..64978 [+], 969	118614705	hypothetical protein
35	P99018ORF_078	64989..65897 [+], 909	118614706	hypothetical protein

Region 2: 106276..114299

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	P99018ORF_122	101462..101953 [+], 492	118614750	hypothetical protein
2	P99018ORF_123	102280..103155 [+], 876	118614751	DNA replication terminus site-binding protein
3	P99018ORF_124	103326..104126 [+], 801	118614752	KfrA protein
4	P99018ORF_125	104056..104367 [+], 312	118614753	hypothetical protein
5	P99018ORF_126	104654..106165 [+], 1512	118614754	putative DNA helicase
6	P99018ORF_127	106276..107316 [+], 1041	118614755	sex pilus assembly	TraF_F
7	P99018ORF_128	107318..108751 [+], 1434	118614756	putative pilus assembly protein	TraH_F
8	P99018ORF_129	108764..112378 [+], 3615	118614757	putative pilus assembly protein	TraG_F
9	P99018ORF_130	112416..112778 [-], 363	118614758	hypothetical protein
10	P99018ORF_131	113494..113766 [+], 273	118614759	Ner-like protein
11	P99018ORF_132	113766..114299 [+], 534	118614760	hypothetical protein	Orf169_F
12	P99018ORF_133	114310..114918 [+], 609	118614761	hypothetical protein
13	P99018ORF_134	114915..115466 [+], 552	118614762	putative regulator protein
14	P99018ORF_135	115526..115945 [-], 420	118614763	DNA binding protein, H-NS-like protein
15	P99018ORF_136	115947..116240 [-], 294	118614764	hypothetical protein
16	P99018ORF_137	116257..117240 [-], 984	118614765	hypothetical protein
17	P99018ORF_138	117739..118278 [+], 540	118614766	hypothetical protein
18	P99018ORF_139	118283..118570 [+], 288	118614767	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Kim MJ; Hirono I; Kurokawa K; Maki T; Hawke J; Kondo H; Santos MD; Aoki T (2008). Complete DNA sequence and analysis of the transferable multiple-drug resistance plasmids (R Plasmids) from Photobacterium damselae subsp. piscicida isolates collected in Japan and the United States. Antimicrob Agents Chemother. 52(2):606-11. [PudMed:18070959]