SecReT4
T4SS ID583
StrainVibrio cholerae MJ-1236
Repliconchromosome 1 [Browse all T4SS(s) in this replicon]
AccessionNC_012668
Location2962770..2970574; 2988974..3018443
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_012668
Region 1: 2962770..2970574
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1VCD_RS13770 (prfC)2958347..2959936 [-], 1590445935337peptide chain release factor 3 
2VCD_RS137752960193..2960840 [-], 648446777664LexA family transcriptional regulator 
3VCD_RS137802960958..2961209 [+], 252446373891helix-turn-helix domain-containing protein 
4VCD_RS137852961265..2962134 [+], 870447128594hypothetical protein 
5VCD_RS137902962175..2962783 [+], 609487844829hypothetical protein 
6VCD_RS137952962770..2963318 [+], 549446771653lytic transglycosylase domain-containing protein  Orf169_F
7VCD_RS138002963315..2963614 [+], 300446132709flagellar transcriptional regulator FlhD 
8VCD_RS138052963611..2964144 [+], 534446488901hypothetical protein 
9VCD_RS138102964202..2964633 [+], 432446105359hypothetical protein 
10VCD_RS138152964666..2968235 [-], 3570446185828conjugal transfer protein TraG  TraG_F
11VCD_RS138202968239..2969627 [-], 1389446677943conjugal transfer protein TraH  TraH_F
12VCD_RS138252969630..2970574 [-], 945447182851thioredoxin family protein  TraF_F
13VCD_RS138302970831..2971790 [-], 960446120738integron integrase 
14VCD_RS138352972078..2972551 [+], 474446700208trimethoprim-resistant dihydrofolate reductase DfrA1 
15VCD_RS138402972686..2973081 [+], 396446018511hypothetical protein 
16VCD_RS138452973279..2973689 [+], 411446514991helix-turn-helix transcriptional regulator 
17VCD_RS138502973826..2974122 [+], 297487846329DUF1801 domain-containing protein 
18VCD_RS138552974222..2974923 [+], 702487827968helix-turn-helix transcriptional regulator 
19VCD_RS201752974920..2975324 [-], 405445945905VOC family protein 
 
Region 2: 2988974..3018443
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1VCD_RS210202984772..2984915 [-], 144446089421hypothetical protein 
2VCD_RS13915 (bet)2984997..2985815 [-], 819446336807phage recombination protein Bet 
3VCD_RS13920 (ssb)2985895..2986314 [-], 420446718671single-stranded DNA-binding protein 
4VCD_RS139252986330..2986656 [-], 327446377867hypothetical protein 
5VCD_RS139302987024..2987626 [+], 603445957933hypothetical protein 
6VCD_RS139352987717..2988379 [-], 663446264360hypothetical protein 
7VCD_RS139402988410..2988742 [-], 333447055179hypothetical protein 
8VCD_RS13945 (traN)2988974..2992666 [-], 3693446727906conjugal transfer protein TraN 
9VCD_RS139502992669..2993697 [-], 1029446658542TraU family protein 
10VCD_RS139552993681..2994805 [-], 1125447176006hypothetical protein 
11VCD_RS139602994816..2995328 [-], 513447089301S26 family signal peptidase 
12VCD_RS139652995312..2995659 [-], 348446967393hypothetical protein 
13VCD_RS13970 (traC)2995652..2998051 [-], 2400446570697type IV secretion system protein TraC 
14VCD_RS139752998051..2998743 [-], 693447151668DsbC family protein 
15VCD_RS139802998888..3000333 [-], 1446446291307sigma 54-interacting transcriptional regulator 
16VCD_RS139853000336..3001868 [-], 1533446971639phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein 
17VCD_RS139903001881..3002990 [-], 1110445998280hypothetical protein 
18VCD_RS139953002987..3005716 [-], 2730487827947AAA family ATPase 
19VCD_RS140003006281..3007219 [-], 939446278731nucleotidyl transferase AbiEii/AbiGii toxin family protein 
20VCD_RS140053007212..3008003 [-], 792487953349type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein 
21VCD_RS140103008223..3008609 [-], 387446102370hypothetical protein  TraA_F
22VCD_RS14015 (traV)3008606..3009178 [-], 573487827949type IV conjugative transfer system lipoprotein TraV 
23VCD_RS140203009253..3010542 [-], 1290446569961TraB/VirB10 family protein 
24VCD_RS140253010542..3011441 [-], 900487827950type-F conjugative transfer system secretin TraK 
25VCD_RS140303011425..3012051 [-], 627446589821hypothetical protein  TraE_F
26VCD_RS14035 (traL)3012048..3012329 [-], 282446356034type IV conjugative transfer system protein TraL 
27VCD_RS140453012618..3013205 [+], 588447090227hypothetical protein 
28VCD_RS140503013232..3013867 [-], 636445955899DUF4400 domain-containing protein 
29VCD_RS140553013854..3014414 [-], 561446468659hypothetical protein 
30VCD_RS14060 (traD)3014424..3016244 [-], 1821446584539conjugative transfer system coupling protein TraD  TraD_F
31VCD_RS140653016293..3018443 [-], 2151446398066TraI domain-containing protein  TraI_F
32VCD_RS140703018598..3021249 [-], 2652446416455AAA family ATPase 
33VCD_RS14075 (brxL)3021293..3023323 [-], 20311939419671protease Lon-related BREX system protein BrxL 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICEVchBan9 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216]