T4SS ID	583
Strain	Vibrio cholerae MJ-1236
Replicon	chromosome 1 [Browse all T4SS(s) in this replicon]
Accession	NC_012668
Location	2962770..2970574; 2988974..3018443
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_012668
Region 1: 2962770..2970574
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	VCD_RS13770 (prfC)	2958347..2959936 [-], 1590	445935337	peptide chain release factor 3
2	VCD_RS13775	2960193..2960840 [-], 648	446777664	LexA family transcriptional regulator
3	VCD_RS13780	2960958..2961209 [+], 252	446373891	helix-turn-helix domain-containing protein
4	VCD_RS13785	2961265..2962134 [+], 870	447128594	hypothetical protein
5	VCD_RS13790	2962175..2962783 [+], 609	487844829	hypothetical protein
6	VCD_RS13795	2962770..2963318 [+], 549	446771653	lytic transglycosylase domain-containing protein	Orf169_F
7	VCD_RS13800	2963315..2963614 [+], 300	446132709	flagellar transcriptional regulator FlhD
8	VCD_RS13805	2963611..2964144 [+], 534	446488901	hypothetical protein
9	VCD_RS13810	2964202..2964633 [+], 432	446105359	hypothetical protein
10	VCD_RS13815	2964666..2968235 [-], 3570	446185828	conjugal transfer protein TraG	TraG_F
11	VCD_RS13820	2968239..2969627 [-], 1389	446677943	conjugal transfer protein TraH	TraH_F
12	VCD_RS13825	2969630..2970574 [-], 945	447182851	thioredoxin family protein	TraF_F
13	VCD_RS13830	2970831..2971790 [-], 960	446120738	integron integrase
14	VCD_RS13835	2972078..2972551 [+], 474	446700208	trimethoprim-resistant dihydrofolate reductase DfrA1
15	VCD_RS13840	2972686..2973081 [+], 396	446018511	hypothetical protein
16	VCD_RS13845	2973279..2973689 [+], 411	446514991	helix-turn-helix transcriptional regulator
17	VCD_RS13850	2973826..2974122 [+], 297	487846329	DUF1801 domain-containing protein
18	VCD_RS13855	2974222..2974923 [+], 702	487827968	helix-turn-helix transcriptional regulator
19	VCD_RS20175	2974920..2975324 [-], 405	445945905	VOC family protein
Region 2: 2988974..3018443
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	VCD_RS21020	2984772..2984915 [-], 144	446089421	hypothetical protein
2	VCD_RS13915 (bet)	2984997..2985815 [-], 819	446336807	phage recombination protein Bet
3	VCD_RS13920 (ssb)	2985895..2986314 [-], 420	446718671	single-stranded DNA-binding protein
4	VCD_RS13925	2986330..2986656 [-], 327	446377867	hypothetical protein
5	VCD_RS13930	2987024..2987626 [+], 603	445957933	hypothetical protein
6	VCD_RS13935	2987717..2988379 [-], 663	446264360	hypothetical protein
7	VCD_RS13940	2988410..2988742 [-], 333	447055179	hypothetical protein
8	VCD_RS13945 (traN)	2988974..2992666 [-], 3693	446727906	conjugal transfer protein TraN
9	VCD_RS13950	2992669..2993697 [-], 1029	446658542	TraU family protein
10	VCD_RS13955	2993681..2994805 [-], 1125	447176006	hypothetical protein
11	VCD_RS13960	2994816..2995328 [-], 513	447089301	S26 family signal peptidase
12	VCD_RS13965	2995312..2995659 [-], 348	446967393	hypothetical protein
13	VCD_RS13970 (traC)	2995652..2998051 [-], 2400	446570697	type IV secretion system protein TraC
14	VCD_RS13975	2998051..2998743 [-], 693	447151668	DsbC family protein
15	VCD_RS13980	2998888..3000333 [-], 1446	446291307	sigma 54-interacting transcriptional regulator
16	VCD_RS13985	3000336..3001868 [-], 1533	446971639	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein
17	VCD_RS13990	3001881..3002990 [-], 1110	445998280	hypothetical protein
18	VCD_RS13995	3002987..3005716 [-], 2730	487827947	AAA family ATPase
19	VCD_RS14000	3006281..3007219 [-], 939	446278731	nucleotidyl transferase AbiEii/AbiGii toxin family protein
20	VCD_RS14005	3007212..3008003 [-], 792	487953349	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
21	VCD_RS14010	3008223..3008609 [-], 387	446102370	hypothetical protein	TraA_F
22	VCD_RS14015 (traV)	3008606..3009178 [-], 573	487827949	type IV conjugative transfer system lipoprotein TraV
23	VCD_RS14020	3009253..3010542 [-], 1290	446569961	TraB/VirB10 family protein
24	VCD_RS14025	3010542..3011441 [-], 900	487827950	type-F conjugative transfer system secretin TraK
25	VCD_RS14030	3011425..3012051 [-], 627	446589821	hypothetical protein	TraE_F
26	VCD_RS14035 (traL)	3012048..3012329 [-], 282	446356034	type IV conjugative transfer system protein TraL
27	VCD_RS14045	3012618..3013205 [+], 588	447090227	hypothetical protein
28	VCD_RS14050	3013232..3013867 [-], 636	445955899	DUF4400 domain-containing protein
29	VCD_RS14055	3013854..3014414 [-], 561	446468659	hypothetical protein
30	VCD_RS14060 (traD)	3014424..3016244 [-], 1821	446584539	conjugative transfer system coupling protein TraD	TraD_F
31	VCD_RS14065	3016293..3018443 [-], 2151	446398066	TraI domain-containing protein	TraI_F
32	VCD_RS14070	3018598..3021249 [-], 2652	446416455	AAA family ATPase
33	VCD_RS14075 (brxL)	3021293..3023323 [-], 2031	1939419671	protease Lon-related BREX system protein BrxL

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEVchBan9 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216]