• T4SS
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T4SS ID	580
Strain	Aeromonas hydrophila plasmid pRA1 (NC_012885)
Replicon	plasmid pRA1 [Browse all T4SS(s) in this replicon]
Accession	NC_012885
Location	43775..71839; 131026..140667
Name	Tra_F
Function	conjugation
Classification	Type IVA; Type F
Experimental investigation has been performed on this T4SS.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_012885
Region 1: 43775..71839
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pRA1_0056	39720..40136 [+], 417	242347993	hypothetical protein
2	pRA1_0057	40586..42775 [-], 2190	242347994	DNA topoisomerase 3 (DNA topoisomerase III)
3	pRA1_0058	42990..43607 [-], 618	242347995	hypothetical protein
4	pRA1_0059 (traI)	43775..46738 [+], 2964	242347996	type IV secretion-like conjugative relaxase TraI	TraI_F
5	pRA1_0060 (traD)	46735..48600 [+], 1866	242347997	type IV secretion-like conjugation coupling factor TraD	TraD_F
6	pRA1_0061	48611..49195 [+], 585	242347998	hypothetical protein
7	pRA1_0062	49152..49781 [+], 630	242347999	putative type IV secretion-like conjugation coupling factor
8	pRA1_0063	49792..50238 [+], 447	242348000	hypothetical protein
9	pRA1_0064	50248..50625 [+], 378	242348001	hypothetical protein
10	pRA1_0065	50625..51287 [+], 663	242348002	hypothetical protein
11	pRA1_0066	51622..51969 [+], 348	242348003	hypothetical protein
12	pRA1_0067 (traL)	52112..52393 [+], 282	242348004	type IV secretion-like conjugative transfer system protein TraL	TraL_F
13	pRA1_0068 (traE)	52390..53016 [+], 627	242348005	type IV secretion-like conjugative transfer sex pilus assembly protein TraE	TraE_F
14	pRA1_0069	53000..53917 [+], 918	242348006	hypothetical protein	TraK_F
15	pRA1_0070 (traB)	53914..55230 [+], 1317	242348007	type IV secretion-like conjugative transfer sex pilus assembly protein TraB	TraB_F
16	pRA1_0071 (traV)	55227..55805 [+], 579	242348008	type IV secretion-like conjugative transfer system protein TraV	TraV_F
17	pRA1_0072 (traA)	55809..56201 [+], 393	242348009	type IV secretion-like conjugative transfer pilin subunit TraA	TraA_F
18	pRA1_0073	56402..61888 [+], 5487	242348010	hypothetical protein
19	pRA1_0074	62037..62744 [+], 708	242348011	hypothetical protein
20	pRA1_0075 (traC)	62741..65188 [+], 2448	242348012	type IV secretion-like conjugative transfer system protein TraC	TraC_F
21	pRA1_0076	65203..65520 [+], 318	242348013	hypothetical protein
22	pRA1_0077	65517..66047 [+], 531	242348014	type IV secretion-like conjugative signal peptidase
23	pRA1_0078 (traW)	66010..67278 [+], 1269	242348015	type IV secretion-like conjugative transfer sex pilus assembly protein TraW	TraW_F
24	pRA1_0079	67275..67952 [+], 678	242348016	cyclic diguanylate phosphodiesterase (EAL) domain protein
25	pRA1_0080 (traU)	67946..68950 [+], 1005	242348017	type IV secretion-like conjugative transfer sex pilus assembly protein TraU	TraU_F
26	pRA1_0081 (traN)	69101..71839 [+], 2739	242348018	conjugal transfer mating pair stabilization protein TraN	TraN_F
27	pRA1_0082	71878..72738 [-], 861	242348019	hypothetical protein
28	pRA1_0083	72850..73500 [-], 651	242348020	hypothetical protein
29	pRA1_0084	73791..74111 [+], 321	242348021	hypothetical protein
30	pRA1_0085	74422..74607 [+], 186	242348022	hypothetical protein
31	pRA1_0086	74828..75796 [+], 969	242348023	ATPase, AAA family
32	pRA1_0087	75808..76713 [+], 906	242348024	hypothetical protein
Region 2: 131026..140667
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	pRA1_0143 (tus)	127046..127921 [+], 876	242348080	DNA replication terminus site-binding protein
2	pRA1_0144	128077..129117 [+], 1041	242348081	hypothetical protein
3	pRA1_0145	129117..129395 [+], 279	242348082	hypothetical protein
4	pRA1_0146	129404..130915 [+], 1512	242348083	hypothetical protein
5	pRA1_0147 (traF)	131026..132066 [+], 1041	242348084	type IV secretion-like conjugative transfer system protein TraF	TraF_F
6	pRA1_0148 (traH)	132068..133501 [+], 1434	242348085	type IV secretion-like conjugative transfer system protein TraH	TraH_F
7	pRA1_0149 (traG)	133514..137119 [+], 3606	242348086	type IV secretion-like conjugative transfer sex pilus assembly protein TraG	TraG_F
8	pRA1_0150	137157..137519 [-], 363	242348087	hypothetical protein
9	pRA1_0151	138095..139357 [+], 1263	242348088	ISEcp1 transposase
10	pRA1_0152	139862..140134 [+], 273	242348089	Ner-like DNA-binding protein
11	pRA1_0153	140134..140667 [+], 534	242348090	transglycosylase SLT domain protein	Orf169_F
12	pRA1_0154	140678..141286 [+], 609	242348091	hypothetical protein
13	pRA1_0155	141283..141837 [+], 555	242348092	hypothetical protein
14	pRA1_0156	141894..142313 [-], 420	242348093	hypothetical protein
15	pRA1_0157	142315..142608 [-], 294	242348094	hypothetical protein
16	pRA1_0158	142625..143608 [-], 984	242348095	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

(1) Fricke WF; Welch TJ; McDermott PF; Mammel MK; LeClerc JE; White DG; Cebula TA; Ravel J (2009). Comparative genomics of the IncA/C multidrug resistance plasmid family. J Bacteriol. 191(15):4750-7. [PudMed:19482926]

This literature contains experimental investigation

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