SecReT4
T4SS ID579
StrainPseudomonas putida plasmid pDK1 (NC_014124)
Repliconplasmid pDK1 [Browse all T4SS(s) in this replicon]
AccessionNC_014124
Location21381..70422
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101110
ComponentTraY_FTrbC_FOrf169_F
Number001

The information of T4SS components from NC_014124
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pDK1_p02016400..18214 [+], 1815296100188hypothetical protein 
2pDK1_p02118284..18700 [+], 417296100189hypothetical protein 
3pDK1_p02218774..19160 [+], 387296100190hypothetical protein 
4pDK1_p02319209..19457 [+], 249296100191hypothetical protein 
5pDK1_p02419524..19769 [+], 246296100192hypothetical protein 
6pDK1_p02520168..20302 [+], 135296100193hypothetical protein 
7pDK1_p02620372..20527 [+], 156296100194hypothetical protein 
8pDK1_p02720574..20780 [+], 207296100195hypothetical protein 
9pDK1_p02820782..20967 [+], 186296100196hypothetical protein 
10pDK1_p02921057..21254 [+], 198296100197hypothetical protein 
11pDK1_p030 (trhN)21381..24017 [+], 2637296100198mating pair stabilization protein  TraN_F
12pDK1_p03124062..24925 [-], 864296100199hypothetical protein 
13pDK1_p032 (tnpA)25052..26302 [+], 1251296100200transposase 
14pDK1_p03326426..26863 [-], 438296100201hypothetical protein 
15pDK1_p03426736..27584 [-], 849296100202hypothetical protein 
16pDK1_p03527591..28178 [-], 588296100203hypothetical protein 
17pDK1_p036 (ssb)28572..29087 [+], 516296100204single-strand DNA-binding protein 
18pDK1_p037 (recT)29155..30246 [+], 1092296100205DNA single-strand annealing protein 
19pDK1_p03830488..31114 [+], 627296100206hypothetical protein 
20pDK1_p03931357..31860 [+], 504296100207hypothetical protein 
21pDK1_p04031992..32600 [+], 609296100208hypothetical protein 
22pDK1_p04132587..33630 [+], 1044296100209putative DNA-processing protein 
23pDK1_p042 (traI)33731..36283 [+], 2553296100210relaxase  TraI_F
24pDK1_p043 (traG)36280..38109 [+], 1830296100211coupling protein  TraD_F
25pDK1_p04438124..38480 [+], 357296100212hypothetical protein 
26pDK1_p04538473..39120 [+], 648296100213hypothetical protein 
27pDK1_p04639208..39978 [+], 771296100214DsbA family oxidoreductase 
28pDK1_p047 (trhL)39975..40262 [+], 288296100215sex pilus assembly protein  TraL_F
29pDK1_p048 (trhE)40262..40903 [+], 642296100216sex pilus assembly protein  TraE_F
30pDK1_p04940910..41038 [+], 129296100217hypothetical protein 
31pDK1_p050 (trhK)41082..42122 [+], 1041296100218sex pilus assembly protein  TraK_F
32pDK1_p051 (trhB)42135..43451 [+], 1317296100219sex pilus assembly protein  TraB_F
33pDK1_p052 (trhV)43462..43962 [+], 501296100220sex pilus assembly protein  TraV_F
34pDK1_p05344093..51487 [+], 7395296100221hypothetical protein 
35pDK1_p054 (trhA)51627..51971 [+], 345296100222sex pilus assembly protein  TraA_F
36pDK1_p05552090..52803 [+], 714296100223protein disulfide isomerase 
37pDK1_p056 (trhC)52815..55280 [+], 2466296100224sex pilus assembly protein  TraC_F
38pDK1_p057 (trhP)55280..55852 [+], 573296100225sex pilus assembly protein 
39pDK1_p058 (trhW)55846..57087 [+], 1242296100226sex pilus assembly protein  TraW_F
40pDK1_p059 (trhU)57044..58126 [+], 1083296100227sex pilus assembly protein  TraU_F
41pDK1_p06058163..58882 [+], 720296100228putative DNA-processing protein 
42pDK1_p06159115..59801 [-], 687296100229hypothetical protein 
43pDK1_p06260213..60521 [+], 309296100230hypothetical protein 
44pDK1_p06360518..61141 [+], 624296100231putative DNA primase 
45pDK1_p06461190..62305 [+], 1116296100232putative DNA primase 
46pDK1_p065 (trhF)62424..63449 [+], 1026296100233sex pilus assembly protein  TraF_F
47pDK1_p066 (trhH)63446..64846 [+], 1401296100234sex pilus assembly protein  TraH_F
48pDK1_p067 (trhG)64858..68265 [+], 3408296100235sex pilus assembly protein  TraG_F
49pDK1_p06868330..68704 [-], 375296100236hypothetical protein 
50pDK1_p06968808..69842 [-], 1035296100237hypothetical protein 
51pDK1_p07068808..69398 [-], 591296100238hypothetical protein 
52pDK1_p07169853..70422 [-], 570296100239lytic transglycosylase  Orf169_F
53pDK1_p07270724..71704 [-], 981296100240hypothetical protein 
54pDK1_p07371965..72459 [+], 495296100241hypothetical protein 
55pDK1_p07472565..73245 [+], 681296100242hypothetical protein 
56pDK1_p07573546..73794 [+], 249296100243hypothetical protein 
57pDK1_p07674058..74534 [+], 477296100244hypothetical protein 
58pDK1_p07774564..75265 [+], 702296100245hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Yano H; Miyakoshi M; Ohshima K; Tabata M; Nagata Y; Hattori M; Tsuda M (2010). Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J Bacteriol. 192(17):4337-47. [PudMed:20581207]
 

Genomics & Bioinformatics Group in MML, SJTU