SecReT4

T4SS
References

T4SS ID	577
Strain	Serratia marcescens plasmid R478 (NC_005211)
Replicon	plasmid R478 [Browse all T4SS(s) in this replicon]
Accession	NC_005211
Location	2025..11636; 29556..38339; 179083..197621
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	1	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	1	1	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	0	1

The information of T4SS components from NC_005211
Region 1: 2025..11636

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	SMR0001 (repHIA)	1..876 [+], 876	38347831	putative rep protein
2	SMR0004 (trhA)	2025..2378 [+], 354	38347832	putative pilin	TraA_F
3	SMR0005 (trhL)	2396..2746 [+], 351	38347833	putative plasmid transfer protein	TraL_F
4	SMR0006 (trhE)	2758..3546 [+], 789	38347834	putative pilus assembly protein	TraE_F
5	SMR0007 (trhK)	3546..4817 [+], 1272	38347835	hypothetical protein	TraK_F
6	SMR0008 (htdO)	4819..5280 [+], 462	38347836	hypothetical protein
7	SMR0009 (trhB)	5270..6625 [+], 1356	38347837	putative transfer protein	TraB_F
8	SMR0010 (htdV)	6633..7115 [+], 483	38347838	hypothetical protein
9	SMR0011 (htdT)	7129..7986 [+], 858	38347839	putative plasmid transfer protein
10	SMR0012 (trhV)	7996..8946 [+], 951	38347840	putative plasmid transfer protein	TraV_F
11	SMR0013 (trhC)	8955..11636 [+], 2682	38347841	putative pilus assembly protein	TraC_F

Region 2: 29556..38339

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	SMR0026 (trhF)	29057..29569 [+], 513	38347854	putative signal peptidase I
2	SMR0027 (trhW)	29556..31067 [+], 1512	38347855	plasmid exported transfer protein	TraW_F
3	SMR0028 (trhU)	31206..32267 [+], 1062	38347856	plasmid exported transfer protein	TraU_F
4	SMR0029 (trhN)	32286..35474 [+], 3189	38347857	conjugal transfer mating pair stabilization protein TraN	TraN_F
5	SMR0030	35503..36375 [-], 873	38347858	lipoprotein
6	SMR0031 (trhI)	36555..38339 [+], 1785	38347859	putative DNA helicase	TraI_F
7	SMR0034	38734..39606 [+], 873	38347860	hypothetical protein
8	SMR0035	39664..40041 [+], 378	38347861	hypothetical protein
9	SMR0036	40102..41079 [+], 978	38347862	hypothetical protein
10	SMR0037	41137..42195 [+], 1059	38347863	putative ATP-binding protein
11	SMR0038	42327..42500 [+], 174	38347864	hypothetical protein

Region 3: 179083..197621

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	SMR0193 (mucB)	174427..175680 [+], 1254	38348013	putative UV protection and repair protein
2	SMR0194	175726..176535 [-], 810	38348014	hypothetical protein
3	SMR0195	176642..177253 [+], 612	38348015	lipoprotein
4	SMR0196	177313..177735 [-], 423	38348016	hypothetical protein
5	SMR0197	177769..178161 [-], 393	38348017	hypothetical protein
6	SMR0198 (dsbC)	178186..178935 [-], 750	38348018	thiol:disulfide interchange protein
7	SMR0199	179083..179622 [+], 540	38348019	putative pilin biogenesis protein	Orf169_F
8	SMR0200	179705..180262 [+], 558	38348020	hypothetical protein
9	SMR0201	180386..181447 [+], 1062	38348021	hypothetical protein
10	SMR0202	181457..181963 [+], 507	38348022	hypothetical protein
11	SMR0203 (trhG)	182086..186036 [-], 3951	38348023	putative inner membrane protein	TraG_F
12	SMR0204 (trhH)	186045..187460 [-], 1416	38348024	putative pilus assembly protein	TraH_F
13	SMR0205 (trhF)	187450..188496 [-], 1047	38348025	hypothetical protein	TraF_F
14	SMR0206 (trhY)	189088..189600 [-], 513	38348026	hypothetical protein
15	SMR0207 (trhR)	189602..190402 [-], 801	38348027	hypothetical protein
16	SMR0208	190950..191111 [+], 162	38348028	hypothetical protein
17	SMR0209 (traH)	191162..191647 [+], 486	38348029	hypothetical protein
18	SMR0210	191644..192381 [+], 738	38348030	hypothetical protein
19	SMR0211 (traI)	192385..195537 [+], 3153	38348031	hypothetical protein
20	SMR0212 (traG)	195537..197621 [+], 2085	38348032	membrane protein	TraD_F
21	SMR0213	197618..198730 [+], 1113	38348033	hypothetical protein
22	SMR0214 (traJ)	198717..199379 [+], 663	38348034	putative inner membrane protein
23	SMR0215	199390..200571 [+], 1182	38348035	putative peptidase
24	SMR0216	200573..201304 [+], 732	38348036	exported protein
25	SMR0217	201591..201944 [-], 354	38348037	hypothetical protein
26	SMR0218	202010..202294 [-], 285	38348038	putative inner membrane protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Gilmour MW; Thomson NR; Sanders M; Parkhill J; Taylor DE (2004). The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmid. 52(3):182-202. [PudMed:15518875]