SecReT4

T4SS
References

T4SS ID	564
Strain	Orientia tsutsugamushi str. Ikeda
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010793
Location	1162791..1185104
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	1	1	1	1	2	2	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	0	0	0	1	0	1	1	0	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_010793

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	OTT_1127	1158279..1158866 [+], 588	189184034	RelA/SpoT-related protein
2	OTT_1128	1159093..1159950 [+], 858	189184035	hypothetical protein
3	OTT_1129	1160117..1160293 [-], 177	189184036	conjugative transfer protein TraD
4	OTT_1130	1160637..1161029 [+], 393	189184037	hypothetical protein
5	OTT_1131	1161260..1161559 [+], 300	189184038	hypothetical protein
6	OTT_1132	1161618..1162073 [-], 456	189184039	conjugative transfer protein TraD
7	OTT_1133	1162368..1162766 [+], 399	189184040	conjugative transfer protein TraA
8	OTT_1134	1162791..1165196 [+], 2406	189184041	conjugative transfer protein TraA	TraI_F
9	OTT_1135	1165465..1168137 [+], 2673	189184042	conjugative transfer protein TraI
10	OTT_1136	1168122..1169114 [+], 993	189184043	transposase
11	OTT_1137	1169124..1170878 [-], 1755	189184044	conjugative transfer protein TraD	TraD_F
12	OTT_1138	1170884..1172029 [-], 1146	189184045	TPR repeat-containing protein 01_07
13	OTT_1139	1172045..1174396 [-], 2352	189184046	conjugative transfer protein TraG	TraG_F
14	OTT_1140	1174479..1175441 [-], 963	189184047	transposase
15	OTT_1141	1175618..1175953 [-], 336	189184048	conjugative transfer protein TraG	TraG_F
16	OTT_1142	1175953..1176432 [-], 480	189184049	conjugative transfer protein TraH	TraH_F
17	OTT_1143	1176627..1177256 [-], 630	189184050	conjugative transfer protein TraH	TraH_F
18	OTT_1144	1177253..1177951 [-], 699	189184051	conjugative transfer protein TraF	TraF_F
19	OTT_1145	1177948..1178583 [-], 636	189184052	conjugative transfer protein TraN	TraN_F
20	OTT_1146	1178872..1179639 [-], 768	189184053	conjugative transfer protein TraN
21	OTT_1147	1179636..1179956 [-], 321	189184054	conjugative transfer protein TrbC	TrbC_F
22	OTT_1148	1180041..1180628 [-], 588	189184055	conjugative transfer protein TraU	TraU_F
23	OTT_1149	1180783..1181793 [+], 1011	189184056	ankyrin repeat-containing protein 06_02
24	OTT_1150	1181692..1183563 [-], 1872	189184057	conjugative transfer protein TraC	TraC_F
25	OTT_1151	1183475..1183804 [-], 330	189184058	hypothetical protein	TraV_F
26	OTT_1152	1183804..1184073 [-], 270	189184059	conjugative transfer protein TraB	TraB_F
27	OTT_1153	1184036..1184275 [-], 240	189184060	conjugative transfer protein TraB
28	OTT_1154	1184375..1184479 [-], 105	189184061	hypothetical protein
29	OTT_1155	1184479..1184781 [-], 303	189184062	hypothetical protein
30	OTT_1156	1184778..1185104 [-], 327	189184063	conjugative transfer protein TraE	TraE_F
31	OTT_1157	1185188..1185331 [-], 144	189184064	conjugative transfer protein TraE
32	OTT_1158	1185331..1185480 [-], 150	189184065	hypothetical protein
33	OTT_1159	1186152..1186460 [-], 309	189184066	integrase
34	OTT_1160	1188175..1188354 [+], 180	189184067	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]