SecReT4

T4SS
References

T4SS ID	561
Strain	Orientia tsutsugamushi str. Ikeda
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010793
Location	1847799..1871543
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	1	1	1	1	1	1	1
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	0	0	0	1	0	1	1	1	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_010793

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	OTT_1812	1843889..1844155 [+], 267	189184719	integrase
2	OTT_1813	1845397..1845678 [+], 282	189184720	transposase
3	OTT_1814	1846220..1847338 [+], 1119	189184721	integrase
4	OTT_1815	1847464..1847799 [+], 336	189184722	hypothetical protein
5	OTT_1816	1847799..1848350 [+], 552	189184723	conjugative transfer protein TraE	TraE_F
6	OTT_1817	1848347..1848823 [+], 477	189184724	hypothetical protein
7	OTT_1818	1849188..1849523 [+], 336	189184725	hypothetical protein
8	OTT_1819	1849577..1850911 [+], 1335	189184726	conjugative transfer protein TraB	TraB_F
9	OTT_1820	1850911..1851204 [+], 294	189184727	hypothetical protein	TraV_F
10	OTT_1821	1851185..1853674 [+], 2490	189184728	conjugative transfer protein TraC	TraC_F
11	OTT_1822	1853671..1854330 [+], 660	189184729	conjugative transfer protein TraW	TraW_F
12	OTT_1823	1854416..1854619 [+], 204	189184730	hypothetical protein
13	OTT_1824	1854623..1855600 [+], 978	189184731	conjugative transfer protein TraU	TraU_F
14	OTT_1825	1855623..1856006 [+], 384	189184732	conjugative transfer protein TrbC	TrbC_F
15	OTT_1826	1856003..1857697 [+], 1695	189184733	conjugative transfer protein TraN	TraN_F
16	OTT_1827	1857694..1858398 [+], 705	189184734	conjugative transfer protein TraF	TraF_F
17	OTT_1828	1858395..1859288 [+], 894	189184735	conjugative transfer protein TraH	TraH_F
18	OTT_1829	1859218..1859697 [+], 480	189184736	conjugative transfer protein TraH
19	OTT_1830	1859697..1862324 [+], 2628	189184737	conjugative transfer protein TraG	TraG_F
20	OTT_1831	1862337..1863476 [+], 1140	189184738	TPR repeat-containing protein 01_10
21	OTT_1832	1863476..1865230 [+], 1755	189184739	conjugative transfer protein TraD	TraD_F
22	OTT_1833	1865232..1866251 [-], 1020	189184740	transposase
23	OTT_1834	1866236..1868908 [-], 2673	189184741	conjugative transfer protein TraI
24	OTT_1835	1869177..1871543 [-], 2367	189184742	conjugative transfer protein TraA	TraI_F
25	OTT_1836	1871607..1872005 [-], 399	189184743	conjugative transfer protein TraA
26	OTT_1837	1872300..1872755 [+], 456	189184744	conjugative transfer protein TraD
27	OTT_1838	1872823..1873737 [-], 915	189184745	hypothetical protein
28	OTT_1839	1873948..1874454 [-], 507	189184746	transposase
29	OTT_1840	1874596..1874784 [-], 189	189184747	transposase
30	OTT_1841	1875085..1875672 [+], 588	189184748	transposase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]