SecReT4
T4SS ID517
StrainSphingomonas sp. KA1 plasmid pCAR3 (NC_008308)
Repliconplasmid pCAR3 [Browse all T4SS(s) in this replicon]
AccessionNC_008308
Location120339..151491
NameTra_F
FunctionNA
ClassificationType IVA; Type F
insolico This T4SS is identified in this study.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number011111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101010
ComponentTraY_FTrbC_FOrf169_F
Number011

The information of T4SS components from NC_008308
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pCAR3_113 (ORF113)116344..117417 [+], 1074113473791pyruvate dehydrogenase (lipoamide) 
2pCAR3_114 (ORF114)117417..118784 [+], 1368113473792pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 
3pCAR3_115 (fdrII)118920..120182 [+], 1263113473793ferredoxin reductase component of carbazole 1,9a-dioxygenase 
4pCAR3_116 (ORF115a)120339..121145 [+], 807113473794transglycosylase  Orf169_F
5pCAR3_117 (ORF116)121112..121387 [-], 276113473795hypothetical protein 
6pCAR3_118 (ORF117)121417..121938 [-], 522113473796hypothetical protein 
7pCAR3_119 (ORF118)122028..122576 [-], 549113473797hypothetical protein 
8pCAR3_120 (ORF119)122732..123046 [+], 315113473798hypothetical protein 
9pCAR3_121 (traL)123109..123393 [+], 285113473799sex pilus assembly and synthesis protein  TraL_F
10pCAR3_122 (traE)123395..124000 [+], 606113473800sex pilus assembly and synthesis protein  TraE_F
11pCAR3_123 (traK)123997..124821 [+], 825113473801sex pilus assembly and synthesis protein  TraK_F
12pCAR3_124 (traB)124821..126194 [+], 1374113473802sex pilus assembly and synthesis protein  TraB_F
13pCAR3_125 (ORF124)126207..127109 [+], 903113473803protein disulfide-isomerase 
14pCAR3_126 (ORF125)127106..128329 [+], 1224113473804hypothetical protein 
15pCAR3_127 (traC)128334..130940 [+], 2607113473805sex pilus assembly and synthesis protein  TraC_F
16pCAR3_128 (ORF127)130937..131287 [+], 351113473806hypothetical protein 
17pCAR3_129 (ORF128)131274..131843 [+], 570113473807conjugal transfer protein 
18pCAR3_130 (ORF129)131752..132369 [+], 618113473808conjugal transfer protein 
19pCAR3_131 (traW)132366..133037 [+], 672113473809sex pilus assembly and synthesis protein  TraW_F
20pCAR3_132 (traU)133297..134316 [+], 1020113473810sex pilus assembly and synthesis protein  TraU_F
21pCAR3_133 (trbC)134331..135101 [+], 771113473811sex pilus assembly and mating pair formation protein  TrbC_F
22pCAR3_134 (traN)135124..137250 [+], 2127113473812mating pair stabilization protein  TraN_F
23pCAR3_135 (ORF134)137231..137650 [+], 420113473813hypothetical protein 
24pCAR3_136 (traF)137653..138471 [+], 819113473814pilus assembly and synthesis protein  TraF_F
25pCAR3_137 (traH)138471..139922 [+], 1452113473815pilus assembly and synthesis protein  TraH_F
26pCAR3_138 (traG)139939..142980 [+], 3042113473816sex pilus assembly and mating pair stabilization protein  TraG_F
27pCAR3_139 (ORF138)142983..143270 [-], 288113473817hypothetical protein 
28pCAR3_140 (ORF139)143450..143785 [+], 336113473818putative transcriptional regulator, AbrB family 
29pCAR3_141 (ORF140)143782..144264 [+], 483113473819hypothetical protein 
30pCAR3_142 (ORF141)144275..144496 [-], 222113473820hypothetical protein 
31pCAR3_143 (ORF141a)144557..145543 [-], 987113473821Probable RNA polymerase sigma factor (RpoD) 
32pCAR3_144 (ORF142)145663..145866 [-], 204113473822hypothetical protein 
33pCAR3_145 (traI)146101..149145 [-], 3045113473823DNA helicase  TraI_F
34pCAR3_146 (traD)149149..151491 [-], 2343113473824conjugal DNA metabolism  TraD_F
35pCAR3_147 (ORF145)151478..151768 [-], 291113473825hypothetical protein 
36pCAR3_148 (ORF146)152192..152470 [+], 279113473826hypothetical protein 
37pCAR3_149 (ORF147)152632..152943 [-], 312113473827hypothetical protein 
38pCAR3_150 (ORF148)152940..153242 [-], 303113473828hypothetical protein 
39pCAR3_151 (ORF149)153412..154467 [-], 1056113473829hypothetical protein 
40pCAR3_152 (ORF150)154690..154998 [+], 309113473830hypothetical protein 
41pCAR3_153 (ORF151)154721..155167 [+], 447113473831hypothetical protein 
42pCAR3_154 (ORF152)155232..155816 [+], 585113473832hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
Identified as part of this study from NC_008308

Genomics & Bioinformatics Group in MML, SJTU